Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0178
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15250.1 68417.m02337 zinc finger (B-box type) family protein       28   3.3  
At5g06350.1 68418.m00711 expressed protein                             27   7.7  
At3g30390.1 68416.m03836 amino acid transporter family protein l...    27   7.7  

>At4g15250.1 68417.m02337 zinc finger (B-box type) family protein
          Length = 330

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 241 QPTAVFCISDKINLLMGI*GVSSFCKGV 158
           QPTAV C+++ ++L  G    +S C G+
Sbjct: 54  QPTAVHCMNENVSLCQGCQWTASNCTGL 81


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 252 RGSLNQLQCFVSVIKLIYLWGSEVSVHFVKGLFCPK 145
           R SLN +QC +SVI L++   ++V V  +   F P+
Sbjct: 815 RNSLNMIQCIISVILLMH---NDVKVRKIISSFKPE 847


>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 287 FCKYDKSKYTTMIPSTKTLVILIITSNIITLRLVS 391
           F + D  K+T+ +     +V LIIT+ I  ++L+S
Sbjct: 189 FKRIDSLKFTSALSVALAVVFLIITAGISIMKLIS 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,743,031
Number of Sequences: 28952
Number of extensions: 175027
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)