Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0176
         (527 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P53223 Cluster: Dolichyldiphosphatase; n=5; Saccharomyc...    33   3.1  
UniRef50_A3IBP2 Cluster: Peptide synthetase; n=1; Bacillus sp. B...    33   4.1  
UniRef50_Q3ZTA2 Cluster: Metal response element-binding transcri...    32   9.4  
UniRef50_Q0P4P1 Cluster: Plxnd1 protein; n=1; Xenopus tropicalis...    32   9.4  

>UniRef50_P53223 Cluster: Dolichyldiphosphatase; n=5;
           Saccharomycetales|Rep: Dolichyldiphosphatase -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 239

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = +3

Query: 198 KCIFQGYGCILNICMCIIKSYIYFRYLVPV---------TQVLYEFIMGPVNXXGIVS 344
           KCIF G   +L+ C+C  + Y+++  L  V         T  LY FI+G +   G+++
Sbjct: 135 KCIFSGALALLSFCVCFSRVYLHYHNLDQVIVGFSVGALTGSLYFFIVGIIRELGLIN 192


>UniRef50_A3IBP2 Cluster: Peptide synthetase; n=1; Bacillus sp.
           B14905|Rep: Peptide synthetase - Bacillus sp. B14905
          Length = 1618

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 192 YHTNIFPWQDSNPRPPCVVTMSLTTTPDGLSSNYSVSIFNLN 67
           ++ +  PWQ    R PC +   L+T P  LSSN   ++FN N
Sbjct: 562 FNVDCLPWQVQQQRKPCNLLDILSTLP-ALSSNNEPTMFNQN 602


>UniRef50_Q3ZTA2 Cluster: Metal response element-binding
           transcription factor isoform H; n=3; Oncorhynchus
           mykiss|Rep: Metal response element-binding transcription
           factor isoform H - Oncorhynchus mykiss (Rainbow trout)
           (Salmo gairdneri)
          Length = 746

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = -3

Query: 291 VLQVPDNGNKCKXXXXXXXXXXXIHNPGKYIYIYHTNIFPWQDSNPRPPCVVTMSLTTTP 112
           +LQV  +G+               H+PG    I  ++    +D NPR PC+  MSL +T 
Sbjct: 311 LLQVDTDGDISLSSSNNLRDNIKGHDPGASADITDSHSLS-EDLNPRSPCLSDMSLISTD 369

Query: 111 DGLSSNYS 88
             L  N S
Sbjct: 370 SQLRENNS 377


>UniRef50_Q0P4P1 Cluster: Plxnd1 protein; n=1; Xenopus
           tropicalis|Rep: Plxnd1 protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 1060

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 168 QDSNPRPPCVVTMSLTTTPDGLSSNYSVSIFNLN 67
           Q+S    P +   SLT TP G++ +Y++S+ N N
Sbjct: 690 QNSTESCPRITATSLTPTPTGVTKDYTLSLLNTN 723


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,408,369
Number of Sequences: 1657284
Number of extensions: 7721088
Number of successful extensions: 16522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16518
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)