Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0176
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   2.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   2.3  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   4.0  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    25   7.0  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   7.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   9.2  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 207 KYIYIYHTNIFPWQDSNPRPPCVVTMSLTTTPDGLSSNYSVSI 79
           K IY  H NI+P    NP  P    ++L   P G   +Y++ I
Sbjct: 212 KIIYDIHHNIYPSTSPNPTSP----VTLNRLPLGKKDSYTLVI 250


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 207 KYIYIYHTNIFPWQDSNPRPPCVVTMSLTTTPDGLSSNYSVSI 79
           K IY  H NI+P    NP  P    ++L   P G   +Y++ I
Sbjct: 212 KIIYDIHHNIYPSTSPNPTSP----VTLNRLPLGKKDSYTLVI 250


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 399 ISNLDSTLQTKIFALPDAI 455
           ISN+ STLQT I AL D +
Sbjct: 452 ISNMRSTLQTDILALIDGV 470


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 190 SYKYLPLAGFEPTTPLCSDHVT 125
           S  Y+  A FEPT P+   HV+
Sbjct: 75  SESYINDASFEPTVPIYESHVS 96


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 138 LHKGVVGSNPAKGRYLYDKYKCIFQGYGCILNICMCIIKSY 260
           L   ++  NPA  ++L      +  G+ C+L   MC +  Y
Sbjct: 46  LFSRIMKFNPAHPKWLNRDRFILSNGHACVLQYIMCHLLGY 86


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 208  KIHLYLSYKYLPLAGFEPTTPLC---SDHVTYHY 116
            ++HL   +KY P AG+ P + +    +D + + Y
Sbjct: 1241 EVHLDFLFKYEPSAGYSPVSEILDGRNDRIKHFY 1274


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 175 EDICMININVFSRVMD 222
           +D C++ IN+ SR++D
Sbjct: 345 DDTCLLKINILSRLLD 360


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 202 HLYLSYKYLPLAGFEPTTPL 143
           HLY  YK+LPL    P + +
Sbjct: 670 HLYFKYKFLPLMDAVPISAI 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,659
Number of Sequences: 5004
Number of extensions: 35319
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)