Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0176
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           28   4.0  
06_03_0128 + 16991750-16991841,16991885-16991951,16992530-169926...    28   4.0  

>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 254  ILHLFPLSGTCNTSSLRIYHGT 319
            ILHL PL G C+T  L I  GT
Sbjct: 1134 ILHLEPLKGLCHTKGLVIRGGT 1155


>06_03_0128 +
           16991750-16991841,16991885-16991951,16992530-16992627,
           16993269-16993563
          Length = 183

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 422 ANENIRFTRRDLQSRTSSLLMH*NH 496
           A ENI FT RDL++R   +  H NH
Sbjct: 72  ARENIPFTNRDLENRLHIIDGHSNH 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,980
Number of Sequences: 37544
Number of extensions: 202051
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)