Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0176
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51210.1 68414.m05760 UDP-glucoronosyl/UDP-glucosyl transfera...    32   0.21 
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s...    27   5.9  
At3g01175.1 68416.m00022 expressed protein                             27   5.9  

>At1g51210.1 68414.m05760 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 433

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 207 FQGYGCILNICMCIIKSYI-YFRYLVPVTQVLYEFIMGPVNXXGI 338
           F  YGCI N C C+ + Y+ Y +  V   +V   F +GP++  G+
Sbjct: 213 FSSYGCIFNTCECLEEDYMEYVKQKVSENRV---FGVGPLSSVGL 254


>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
           similar to cytosolic aminopeptidase P from [Homo
           sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 569

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -3

Query: 201 IYIYHTNIFP--WQDSNPRPP 145
           +Y+Y+ N+    W+DS P+PP
Sbjct: 52  VYLYNVNLVDEIWKDSRPKPP 72


>At3g01175.1 68416.m00022 expressed protein 
          Length = 401

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 180 YLYDKYKCIFQGYGCILNICMCIIKSYIYFRYLVPVTQVLY 302
           +L   Y  ++  +  +L +C  +I  Y++F +L+P  Q LY
Sbjct: 20  FLKSSYMKLYM-HPLVLFLCQLLIWLYLFFLWLLPPFQALY 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,784,797
Number of Sequences: 28952
Number of extensions: 175604
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)