Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0175
         (520 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UIJ9 Cluster: Putative uncharacterized protein; n=1; ...    33   3.0  
UniRef50_Q18ER3 Cluster: DNA polymerase II large subunit (EC 2.7...    33   3.0  
UniRef50_A2FAI5 Cluster: Ankyrin repeat protein, putative; n=1; ...    33   5.2  
UniRef50_Q8IB74 Cluster: Putative uncharacterized protein PF08_0...    32   9.0  
UniRef50_O97264 Cluster: Putative uncharacterized protein MAL3P5...    32   9.0  

>UniRef50_Q0UIJ9 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 521

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 510 NTLRKVQKSYSTTLRWCKKHGQPKYP 433
           NTLR +  S    L W  KHG+P+YP
Sbjct: 211 NTLRVLHASAEKELAWIDKHGKPRYP 236


>UniRef50_Q18ER3 Cluster: DNA polymerase II large subunit (EC
           2.7.7.7) (Pol II) [Contains: Hwa polC 1 intein (Hwa pol
           II 1 intein); Hwa polC 2 intein (Hwa pol II 2 intein)];
           n=3; Halobacteriaceae|Rep: DNA polymerase II large
           subunit (EC 2.7.7.7) (Pol II) [Contains: Hwa polC 1
           intein (Hwa pol II 1 intein); Hwa polC 2 intein (Hwa pol
           II 2 intein)] - Haloquadratum walsbyi (strain DSM 16790)
          Length = 2289

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 486 SYSTTLRWCKKHGQPKYPPYTYIF*D 409
           ++   +RW KKH  P +P YTY++ D
Sbjct: 495 TFENAMRWAKKHDIPLHPAYTYLWHD 520


>UniRef50_A2FAI5 Cluster: Ankyrin repeat protein, putative; n=1;
           Trichomonas vaginalis G3|Rep: Ankyrin repeat protein,
           putative - Trichomonas vaginalis G3
          Length = 262

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = -3

Query: 440 NIHLIHTYFKMHIYIYIVQDDITDLKYM*FYSLEN 336
           +I+ I TY   ++Y+ ++Q+DI+++ Y  F+ +EN
Sbjct: 49  DIYPIITYNNFYLYLILLQEDISNIIYAPFFGIEN 83


>UniRef50_Q8IB74 Cluster: Putative uncharacterized protein
           PF08_0030; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF08_0030 - Plasmodium
           falciparum (isolate 3D7)
          Length = 807

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 40  YIINDKKKLNISGKNEKKK*SQNIILSKEKQKKTKL 147
           Y++N+ K LNI  K +K + + + + +K K KK +L
Sbjct: 723 YVVNNNKNLNIPSKKDKPQINNHSVRNKLKSKKDEL 758


>UniRef50_O97264 Cluster: Putative uncharacterized protein
           MAL3P5.11; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL3P5.11 - Plasmodium
           falciparum (isolate 3D7)
          Length = 611

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 118 KVLYSEIIFFFHFFQKYLIFFCRLLYK-FKANYAL 17
           K + +    FF FF KYL+F C  ++K FK++ +L
Sbjct: 535 KSIITLYFLFFQFFYKYLVFHCEDIFKNFKSHISL 569


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,474,685
Number of Sequences: 1657284
Number of extensions: 7119458
Number of successful extensions: 19019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18775
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)