Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0175
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   5.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.1  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   6.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.8  

>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 124 PLKVLYSEII--FFFHFFQKYLIFFCRLLYKFKAN 26
           PLK+LY+ +I   +F+    +L+ F   LY    N
Sbjct: 284 PLKLLYTSVIPLIYFYSILSHLLVFAYALYSLCPN 318


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 504 LRKVQKSYSTTLRWCKKHGQPKYPPYTYI 418
           ++K++K +S  L  CKK G    PP  Y+
Sbjct: 291 VKKLEKYWSIYLSNCKKLGISTLPPSNYL 319


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 267 VKELRGFFNDFSEFMKKNVYLI 202
           V  L+ F+  F   MKK +YL+
Sbjct: 176 VNALKSFYQKFPHLMKKKLYLV 197


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 520  RGP*HITKSSKKLFNYIKMVQKTWSTKISTLYIHILRCIFIYI*XKMISQI*N 362
            RG  H   + ++L+N IK + K   T        I+RC  I    K IS+I N
Sbjct: 1341 RGSVHFEYNDEQLYNQIKFLLKAVQTTTGATRNGIIRCNAI---NKNISRIMN 1390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,200
Number of Sequences: 5004
Number of extensions: 35579
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)