Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0175
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)                    27   7.0  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           27   9.3  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
          Length = 1366

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 249  ILLTPSLIKFIFSWSVWYL--LPQSAFQ--YEHVF*TIKLHIFQICDIILXYIYINMHLK 416
            IL  P  + ++   S W+   +P S     +EH +  I  + +Q+ D+I+   Y  +   
Sbjct: 918  ILYKPQFVSYMIHKSFWFKGEVPNSRVSQMHEHGYTKIVFYFYQVADVIMLQPYAEI--- 974

Query: 417  ICMYKVDILVDHVF 458
            +   K+ IL+  +F
Sbjct: 975  LARTKLVILIVSLF 988


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 267 VKELRGFFNDFSEFMK 220
           +KELRG+ N+ SEF+K
Sbjct: 315 IKELRGWLNEASEFLK 330


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 267  VKELRGFFNDFSEFMK 220
            +KELRG+ N+ SEF+K
Sbjct: 5161 IKELRGWLNEASEFLK 5176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,844
Number of Sequences: 59808
Number of extensions: 217635
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)