Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0174
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   1.7  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    26   3.9  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   6.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 253 NIFVTFDLGGLPIVRQMDHNNLCERIKCLL 164
           +I  TFDL G  + R++D N  C+   C +
Sbjct: 439 DIHQTFDLKGSTLGRELDENQPCQSPMCTM 468


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 187 CERIKCLLTFYCMVSHDVLPNTVDTNLIIWFLKPLEKVQN 68
           CERI C    Y M   +++PN ++T  + WF + L+   N
Sbjct: 298 CERI-CSQARYIM---NLIPNALNTASVQWFERTLDDSSN 333


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 363 FRSK*FWF*TYLILSHRIHNTMLFLTPNNYGNGVCIFPESSAAE 494
           F S+  WF  ++ L     N +  LT N+YG    I P + AA+
Sbjct: 223 FFSEGLWFTRWMQLIKDQPNYVQVLTWNDYGESTYIGPTNYAAD 266


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/61 (18%), Positives = 27/61 (44%)
 Frame = -3

Query: 226  GLPIVRQMDHNNLCERIKCLLTFYCMVSHDVLPNTVDTNLIIWFLKPLEKVQNFVTFILL 47
            G+   + M+     + ++    F  +   + L N    N + W +KP  +++ F   +++
Sbjct: 865  GIRWEKDMNLKTAAKDMQAAKAFVRIKQTEFLKNHPKYNDVFWVIKPSNRIRRFCQRLVM 924

Query: 46   P 44
            P
Sbjct: 925  P 925


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,351
Number of Sequences: 5004
Number of extensions: 46876
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)