Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0174
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 30 1.3
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 28 4.0
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576... 28 5.2
06_01_0083 - 659510-661267,661577-662384,662700-663646 27 6.9
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 27 6.9
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 27 9.1
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 27 9.1
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 27 9.1
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +3
Query: 420 NTMLFLTPNNYGNGVCIFP----ESSAAENIQIFF 512
N +LF T N +GNG C F ++S E + FF
Sbjct: 77 NDLLFFTCNGHGNGSCSFDVLIFDASGCEKVSCFF 111
>02_05_1056 -
33804717-33804871,33805352-33805418,33805508-33805576,
33806414-33806548,33806609-33806680,33807281-33807375,
33807778-33807859,33807949-33807999,33808107-33808187,
33808534-33808575,33808705-33808803,33809044-33809115,
33809166-33809270
Length = 374
Score = 28.3 bits (60), Expect = 4.0
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = -3
Query: 415 ILCDKIKYV*NQNYLDLKQSGNLITDV--QIKNQAK*IKQAMN--LSL*E**RVMD*SNI 248
IL KIK++ DLK S N I V +++N K +K+ M LSL
Sbjct: 123 ILSFKIKFL--TQVADLKNSLNTINSVAEEVRNSVK-LKRVMQTILSLGNALNQGTARGS 179
Query: 247 FVTFDLGGLPIVRQMDHNNLCERIKCLLTFYCMVSHDVLPNTVDTNLIIWFLKPLEK 77
V F L L ++ +D R+ L+ + C V D LP +D N + +L+P K
Sbjct: 180 AVGFRLDSL--LKLIDIRARNNRMT-LMHYLCKVLSDKLPEVLDFNKDLTYLEPASK 233
>10_08_0512 +
18455454-18456121,18456214-18456318,18457493-18457615,
18457732-18457902,18458076-18458205,18458458-18458670,
18458757-18458866,18459144-18459186
Length = 520
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 265 LRVIILINLSSWPVLFILLGF 327
LR+ I+I +S W V+F +LGF
Sbjct: 20 LRLWIVIGISIWVVIFFILGF 40
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 417 HNTMLFLTPNNYGNGVCIFPESSAAEN 497
HN LF T YG G I+P+ + +N
Sbjct: 247 HNRWLFETKGTYGYGNAIWPKENEVDN 273
>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 444 NNYGNGVCIFPESSAAENIQIFFIAL 521
N +GVC++P+ E +Q+F + L
Sbjct: 1278 NTMDDGVCLYPDLQCGEIVQLFSLVL 1303
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 214 VRQMDHNNLCERIKCLLTFYCMVSHDVLPNTVDT--NLIIWFLKPLEKVQNFVTFILLPT 41
V+ + N+C+ +K ++T+Y D N V T LI + + PLE + I+
Sbjct: 255 VKSLFELNICDLLKQMITYYTSSHSD--HNKVQTLVELIYYLMPPLEMCDHRTELIIAKK 312
Query: 40 *SLVKP*GY 14
+ + GY
Sbjct: 313 NVITEQSGY 321
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 199 HNNLCERIKCLLTFYC--MVSHDVLPNTV 119
HN +RI+ LL F C M S VLPN++
Sbjct: 76 HNENRDRIRILLRFLCGLMCSKVVLPNSI 104
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 223 LPIVRQMDHNNLCERIKCLLTFYCMVSHDVLPNTVDTNLIIWF 95
LP R D L + + C + F C V D P ++ IW+
Sbjct: 210 LPWPRSRDMEYLTKSLLCAVWFGCAVIGDTQPKLACLSIQIWY 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,736
Number of Sequences: 37544
Number of extensions: 255518
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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