Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0174
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_58172| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_40542| Best HMM Match : B3_4 (HMM E-Value=0)                        27   9.4  

>SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 507 KFEYFLQHCSQEICIHHFHNYWALKTALCCE 415
           K  YF QHCS E C +  + ++    +  C+
Sbjct: 244 KRRYFRQHCSLEFCYNFAYKFYTKNLSSVCD 274


>SB_58172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 214 VRQMDHNNLCERI--KCLLTFYC-MVSHDVLPNTVDTNLIIWFLKPLEKVQNF 65
           +R + HN+   +   KC L   C   SH +     D N +IWF +P EK + F
Sbjct: 27  LRLIKHNSATTKKERKCSLPNLCDESSHYITLGASDVN-VIWFQRPFEKREIF 78


>SB_40542| Best HMM Match : B3_4 (HMM E-Value=0)
          Length = 325

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 164 NILLH--GQSRCASEYSRYKLNYMVLKTTGEGTKF 66
           N +LH  GQ   A + ++ K N +V+KT   GTKF
Sbjct: 143 NYVLHELGQPLHAFDANKIKGNKVVIKTVAAGTKF 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,870
Number of Sequences: 59808
Number of extensions: 316800
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)