Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0174
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical ...    28   4.7  
AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical...    28   4.7  
AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8 prot...    28   4.7  

>AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 60  VTKFCTFSSGFKNHIIKFVSTVFGSTS 140
           +T+F T SS +KNHI+K + T    TS
Sbjct: 348 ITQFATVSS-YKNHIVKALRTAANPTS 373


>AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 60  VTKFCTFSSGFKNHIIKFVSTVFGSTS 140
           +T+F T SS +KNHI+K + T    TS
Sbjct: 348 ITQFATVSS-YKNHIVKALRTAANPTS 373


>AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8
           protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 60  VTKFCTFSSGFKNHIIKFVSTVFGSTS 140
           +T+F T SS +KNHI+K + T    TS
Sbjct: 348 ITQFATVSS-YKNHIVKALRTAANPTS 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,791
Number of Sequences: 27780
Number of extensions: 255389
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)