Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0173
         (519 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17L69 Cluster: Poly(Adp-ribose) glycohydrolase; n=1; A...    36   0.56 
UniRef50_UPI0000F207D8 Cluster: PREDICTED: similar to nucleotide...    34   1.7  
UniRef50_A7AVU9 Cluster: Elongation factor Tu-like protein; n=1;...    33   3.0  
UniRef50_Q09735 Cluster: Putative aminopeptidase C13A11.05; n=1;...    33   3.9  
UniRef50_Q22CW2 Cluster: Heat shock protein 70 homolog; n=1; Tet...    33   5.2  
UniRef50_O89163 Cluster: RNA polymerase; n=2; Rice grassy stunt ...    32   6.8  

>UniRef50_Q17L69 Cluster: Poly(Adp-ribose) glycohydrolase; n=1;
           Aedes aegypti|Rep: Poly(Adp-ribose) glycohydrolase -
           Aedes aegypti (Yellowfever mosquito)
          Length = 717

 Score = 35.9 bits (79), Expect = 0.56
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 48  LRHTNYGIYEYITFQEIEKCSVWRSLR--RKEDLPPSG*Y 161
           LR   Y +Y ++   +++ C +WR+L+  RK +LPPS  Y
Sbjct: 485 LRDQFYAMYTFLVDHKVKVCEIWRTLKDFRKHNLPPSKLY 524


>UniRef50_UPI0000F207D8 Cluster: PREDICTED: similar to
           nucleotide-binding oligomerization domains 27,; n=3;
           Danio rerio|Rep: PREDICTED: similar to
           nucleotide-binding oligomerization domains 27, - Danio
           rerio
          Length = 1336

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 351 LARRRSTQTYSYCECFLTVSNGITLCDKADGFRMYIVTYLQVADLFNEELKSIL 512
           L+  + + T S  +C LTVS+  +LC+K  GF +  +  L    L N+ LK IL
Sbjct: 738 LSFSKRSDTISLKQCNLTVSHVASLCNKLRGFAILTLLDLSNNSLGNKGLKKIL 791


>UniRef50_A7AVU9 Cluster: Elongation factor Tu-like protein; n=1;
           Babesia bovis|Rep: Elongation factor Tu-like protein -
           Babesia bovis
          Length = 1222

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 91  RKLKNVQFGEVYDERKIFHRAGDICSVDR 177
           +K+K V   + YDER+ F R G++CSVDR
Sbjct: 544 QKMKRVH--DAYDERQRFSRQGNLCSVDR 570


>UniRef50_Q09735 Cluster: Putative aminopeptidase C13A11.05; n=1;
           Schizosaccharomyces pombe|Rep: Putative aminopeptidase
           C13A11.05 - Schizosaccharomyces pombe (Fission yeast)
          Length = 513

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 112 FGEVYDERKIFHRAGDICSVDRRGECCCSELVYMRFILKMS*ARFRHLQLSCVV 273
           F E Y ++       D+C+V R G  CC+   +++  L      F HL ++ V+
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDIAGVM 486


>UniRef50_Q22CW2 Cluster: Heat shock protein 70 homolog; n=1;
           Tetrahymena thermophila SB210|Rep: Heat shock protein 70
           homolog - Tetrahymena thermophila SB210
          Length = 146

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 96  IEKCSVWRSLRRKEDLPPSG*YLLGRPTRRMLLFGTCIYALYLENVVSEIQASSII 263
           IE    +R+      + P G  L+G P +R + F T +Y  YL N  S +Q +S I
Sbjct: 49  IENAEGFRTTPSVVAILPDGSRLVGAPAKRQVSFMTILYKSYLLNPTSTLQFNSNI 104


>UniRef50_O89163 Cluster: RNA polymerase; n=2; Rice grassy stunt
            virus|Rep: RNA polymerase - Rice grassy stunt virus
          Length = 2925

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 120  FSKLNIFQFPGTLCTRRFRNWCASVFVEVLSVQ*LCKL 7
            F+++N+ QFP  +  +R ++WC  +F   L  Q + +L
Sbjct: 2725 FTQMNLGQFPDLVDEKRLKSWCRELFESSLGYQKIVQL 2762


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,087,304
Number of Sequences: 1657284
Number of extensions: 9859010
Number of successful extensions: 21680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21674
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)