Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0173
         (519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 314 VVPSVVWFHLISSGPTTLDA 373
           + PSV++ HL  S PTT  A
Sbjct: 239 MAPSVMYPHLNRSSPTTATA 258


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 314 VVPSVVWFHLISSGPTTLDA 373
           + PSV++ HL  S PTT  A
Sbjct: 187 MAPSVMYPHLNRSSPTTATA 206


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 314 VVPSVVWFHLISSGPTTLDA 373
           + PSV++ HL  S PTT  A
Sbjct: 370 MAPSVMYPHLNRSSPTTATA 389


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 262 SCVV*WLPATFSNECQSCSAERC 330
           SC++     T  N+C++C  ++C
Sbjct: 81  SCII---DKTHRNQCRACRLKKC 100


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 262 SCVV*WLPATFSNECQSCSAERC 330
           SC++     T  N+C++C  ++C
Sbjct: 81  SCII---DKTHRNQCRACRLKKC 100


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 118 EVYDERKIFHRAGD 159
           E+ DE ++FH  GD
Sbjct: 389 ELSDETELFHLGGD 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,285
Number of Sequences: 336
Number of extensions: 2621
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)