Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0173
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    33   0.026
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.55 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   3.9  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   5.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.8  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 112 FGEVYDERKIFHRAGDICSVDRRGECCCSELVYMRFILKMS*ARFRHLQLSCVV 273
           F E Y ++       D+C+V R G  CC+   +++  L      F HL ++ V+
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDIAGVM 486


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 224 KIKRIYTSSEQ---QHSPRRSTEQISPARWKIFLSS*TSPN*T 105
           ++ R   SSE     H P R  E  +PAR  I L S  SPN T
Sbjct: 58  RVSRTLRSSESVHTNHGPERVFESPTPARTSISLESAISPNGT 100


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 96  FPGTLCTRRFRNWCASVFVEVLSVQ 22
           FP  LC +R R W A  +   L+V+
Sbjct: 536 FPMILCGKRLRKWTAKQYYTFLNVR 560


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 29  ESTSTKTEAHQLRNLRVHNVPGN*KMFSLEKFTTKGRSS 145
           +STST  +     +L + ++P N K FS EK   +   S
Sbjct: 7   KSTSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASES 45


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 57  TNYGIYEYITFQEIEK--CSVWRSLRRKEDLPPSG*YLLGRPTRRMLLFGTCIYALY 221
           TN    + +TF  I K  CS+ + LR K+ +  +     G   RR++ FGT    +Y
Sbjct: 290 TNSSNAKNVTFATIFKLYCSLRQGLRVKDWMNENKEIFKGLDVRRLISFGTIKGLIY 346


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 YLLGRPTRRMLLFGTCIYALYLENVVSEIQ 248
           YL GR  R+   + TCI    LEN+ +E++
Sbjct: 179 YLNGRYFRKRAFYLTCIAKHLLENLGNEVK 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,463
Number of Sequences: 5004
Number of extensions: 44571
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)