Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0173
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1100 + 10097044-10097949,10098074-10098274,10098796-100989...    28   5.2  
06_01_0286 - 2094920-2097805                                           27   6.8  
02_01_0711 - 5324079-5324141,5324900-5324962,5325329-5325642,532...    27   6.8  
02_05_0500 - 29538409-29539283,29540306-29541641                       27   9.0  

>07_01_1100 +
           10097044-10097949,10098074-10098274,10098796-10098991,
           10099697-10099881
          Length = 495

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 277 WLPATFSNECQSCSAERCVVS 339
           WLP +++N C  C+A   VV+
Sbjct: 182 WLPDSYANSCMQCAASFTVVT 202


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 123 NFSKLNIFQFPGTLCTRRFRNWCASVFVEVLSVQ*LCKL 7
           NF+ LN     G   + RF NW AS++   L     C+L
Sbjct: 229 NFTVLNEIDLSGNNFSSRFPNWLASIYTLSLINLDYCEL 267


>02_01_0711 -
           5324079-5324141,5324900-5324962,5325329-5325642,
           5326076-5326245,5326347-5326431,5326775-5327015
          Length = 311

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 275 DGY-PPHSVMSAKAVVPSVVWFHLISSGPTTL 367
           DGY P HS+M  +   P   W   + +GP  L
Sbjct: 272 DGYIPKHSIMELQKAWPGSEWCSSVDAGPLDL 303


>02_05_0500 - 29538409-29539283,29540306-29541641
          Length = 736

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 222 DKAHIYKFRTTTFAASVYRANITRSVEDLPFVV 124
           D  ++  F +T F A++YR+N T   E L FV+
Sbjct: 110 DGKYVASF-STVFRANLYRSNTTMKGEGLAFVI 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,621,943
Number of Sequences: 37544
Number of extensions: 274194
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)