Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0173
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)             32   0.25 
SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.0  
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              27   9.3  

>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
          Length = 653

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  QSYCTESTSTKTEAHQLRNLRVHNVPGN*KMFSLEKFTTKGRSSTER 154
           ++ CT+    KT AH+ +N   HN  G+ K    E +T K +   ++
Sbjct: 399 ENECTDVDECKTNAHECKNAFCHNTLGSYKCSCKEGYTFKDKDPVQK 445


>SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 420

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 122 FTTKGRSSTERVIFAR*TDAANVVVRNLYICALS*KCRERDSGIFNYLALYDGYPPH 292
           FT K    T  +I +R       V+   Y C +  KC  R + +  +L ++ G  P+
Sbjct: 240 FTRKAHLKTHLMIHSREEPYCTNVMNKPYKCDVCGKCLTRKANLNTHLMIHTGQKPY 296


>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 969

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 172 LPSKYHPLGGRSSFRRKLLQTEHF 101
           L  KYHPL G +   R+ L  +HF
Sbjct: 343 LAGKYHPLDGMTEETRQQLVNDHF 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,662
Number of Sequences: 59808
Number of extensions: 329624
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)