Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0173
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10490.1 68418.m01215 mechanosensitive ion channel domain-con...    31   0.61 
At3g46190.1 68416.m05000 meprin and TRAF homology domain-contain...    27   5.7  

>At5g10490.1 68418.m01215 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 519

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 216 LYLENVVSEIQASSIILRCMMATRH 290
           ++LENV+ E QA SI++ C + T H
Sbjct: 245 VFLENVIPENQALSILISCFVKTSH 269


>At3g46190.1 68416.m05000 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 291

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 60  NYGIYEYITFQEIE 101
           NYGI EY T+QE+E
Sbjct: 111 NYGISEYYTYQEVE 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,131
Number of Sequences: 28952
Number of extensions: 223252
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)