Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0170
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 85  HYASRKIYYVSHRLHFEPSHCGIIMQRIFGCD 180
           H+ + K+Y    R ++ P+    I +R+  CD
Sbjct: 142 HFGATKVYNSMKREYYWPNMYRTIKKRLRSCD 173


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 216 FTNVFQYLVSLGVKQFIVNYV 278
           F+     ++   V++F+VNY+
Sbjct: 438 FSRAMDVVLGTEVREFVVNYI 458


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 96  TQDLLCIPPTTLRAESLRHYNA 161
           T + +  PP +++ ES  +YN+
Sbjct: 458 TNNAIMTPPASVQTESSDNYNS 479


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 96  TQDLLCIPPTTLRAESLRHYNA 161
           T + +  PP +++ ES  +YN+
Sbjct: 406 TNNAIMTPPASVQTESSDNYNS 427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,798
Number of Sequences: 336
Number of extensions: 2292
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)