Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0170
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    28   0.73 
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   2.2  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   3.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   9.0  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -1

Query: 320 RKNNFNCLTRPSREHIIHDKLLHTKRY*ILEDVSKKILITSKNNAIASQPKILCIIMPQ* 141
           + NNF+   R    +  H K+ H ++  +  D   ++L  +  N    QP++LC++  + 
Sbjct: 97  KHNNFSSFVRQLNMYGFH-KVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKK 155

Query: 140 LGSK 129
            GS+
Sbjct: 156 AGSQ 159


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 114 IPPTTLRAESLRHYNAENFWLRCYRVIFTSN*YFFTNV 227
           IP T++R   LR      +W R YR+ F +  ++F NV
Sbjct: 107 IPRTSIRVSKLR------YWQRDYRLAFPNFIFYFDNV 138


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 106 KSCVTHNGFKGFIYLFIVF 50
           KS V HNG    +YLF +F
Sbjct: 274 KSVVCHNGMADLVYLFSLF 292


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 168 FWLRCYRVIFTSN 206
           FWLR YRV F +N
Sbjct: 583 FWLRTYRVFFLNN 595


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +3

Query: 42  KRKKTINK*IKPLKPLCVTQDLLCIPPTTLRA---ESLRHYNAEN 167
           K K  +N    P  P+C   D    PPT       + + H  +EN
Sbjct: 519 KAKSNVNLQYSPKTPICKINDETLKPPTIANIAGHKQMNHLTSEN 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,575
Number of Sequences: 5004
Number of extensions: 35875
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)