Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0170
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   27   7.1  
SB_57521| Best HMM Match : rve (HMM E-Value=0.13)                      27   9.4  
SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)                  27   9.4  

>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 218  Y*RLPVSSISWCEAVYRELCVHGTDEL 298
            Y RLPV     CE ++R LC+H    L
Sbjct: 1858 YQRLPVLLPEVCEVLFRNLCIHANPTL 1884


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 356 YTLSHVASILCLRKNNFNCLTRPSREHIIHDKLLHTKRY*ILEDVSKKILITSKNNA 186
           Y L+     +C+R   + C+T  S  H    KL     +  L  + KK+L+  +N A
Sbjct: 38  YPLAWYGESICMRIELYGCITAMSASHSKASKLSEKNSHSFL--LPKKVLMKLQNEA 92


>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 1105

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 75  PLKPLCVTQDLLCIPPTTLRAESLRHYNAENF 170
           P  P+ VT+DL   PP  LR E +    A++F
Sbjct: 371 PSAPIRVTKDLRLQPPGNLRKEDILTQYADSF 402


>SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)
          Length = 578

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 326 CLRKNNFNCLTRPSREHIIHDKLLH 252
           C  K   NC+TR SR  I H   +H
Sbjct: 20  CATKRIINCMTRFSRNPISHSNYVH 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,847,590
Number of Sequences: 59808
Number of extensions: 245928
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)