Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0170
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11280.3 68414.m01295 S-locus protein kinase, putative simila...    31   0.47 
At1g11280.2 68414.m01294 S-locus protein kinase, putative simila...    31   0.47 
At1g11280.1 68414.m01296 S-locus protein kinase, putative simila...    31   0.47 

>At1g11280.3 68414.m01295 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 808

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 359 NYTLSHVASILCL--RKNNFNCLTRPSREHIIHDKLLHTKRY*ILEDVSKKILITSKNN 189
           N T+S   S++ L   KN      RPS  +  H KLL T    I++DVS+ +L  S  N
Sbjct: 92  NLTISRNGSLILLDSSKNVVWSTRRPSISNKCHAKLLDTGNLVIVDDVSENLLWQSFEN 150


>At1g11280.2 68414.m01294 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 820

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 359 NYTLSHVASILCL--RKNNFNCLTRPSREHIIHDKLLHTKRY*ILEDVSKKILITSKNN 189
           N T+S   S++ L   KN      RPS  +  H KLL T    I++DVS+ +L  S  N
Sbjct: 92  NLTISRNGSLILLDSSKNVVWSTRRPSISNKCHAKLLDTGNLVIVDDVSENLLWQSFEN 150


>At1g11280.1 68414.m01296 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 830

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 359 NYTLSHVASILCL--RKNNFNCLTRPSREHIIHDKLLHTKRY*ILEDVSKKILITSKNN 189
           N T+S   S++ L   KN      RPS  +  H KLL T    I++DVS+ +L  S  N
Sbjct: 102 NLTISRNGSLILLDSSKNVVWSTRRPSISNKCHAKLLDTGNLVIVDDVSENLLWQSFEN 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,570,625
Number of Sequences: 28952
Number of extensions: 167213
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)