Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0169
         (523 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O28253 Cluster: Putative uncharacterized protein; n=1; ...    35   0.98 
UniRef50_Q8PSV7 Cluster: Conserved protein; n=1; Methanosarcina ...    35   1.3  
UniRef50_A3EK17 Cluster: Putative uncharacterized protein; n=1; ...    33   3.0  
UniRef50_A6QTG5 Cluster: Dolichyl-di-phosphooligosaccharide-prot...    33   4.0  
UniRef50_Q09609 Cluster: Uncharacterized protein R07B1.9; n=2; C...    33   5.2  
UniRef50_Q6KH60 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_Q8IAQ7 Cluster: Putative uncharacterized protein PF08_0...    32   6.9  
UniRef50_Q6CA20 Cluster: Yarrowia lipolytica chromosome D of str...    32   6.9  
UniRef50_Q6VZV1 Cluster: CNPV046 ankyrin repeat protein; n=1; Ca...    32   9.2  

>UniRef50_O28253 Cluster: Putative uncharacterized protein; n=1;
           Archaeoglobus fulgidus|Rep: Putative uncharacterized
           protein - Archaeoglobus fulgidus
          Length = 544

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
 Frame = +2

Query: 245 LFVLNLQYRNPFLY-RLIKTHSSIKHDSHRKW-PKSGLLTI*HNKNLKG 385
           L+ +NL YRN F+Y  LI  +S++K D ++   P++  L+I H  NL+G
Sbjct: 104 LYDVNLSYRNDFVYIPLIPANSNLKIDPYKTLSPQNFPLSITHTANLQG 152


>UniRef50_Q8PSV7 Cluster: Conserved protein; n=1; Methanosarcina
           mazei|Rep: Conserved protein - Methanosarcina mazei
           (Methanosarcina frisia)
          Length = 112

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 209 REIKIRNIIFSILFVLNLQYRNPFLYRLIKTHSSIKHDSHR 331
           R IK    +FSI+  ++  Y N ++Y  +KT+  IK DSH+
Sbjct: 69  RRIKPEKQLFSIIKKIHRDYSNYYIYPEMKTYKEIKIDSHQ 109


>UniRef50_A3EK17 Cluster: Putative uncharacterized protein; n=1;
           Vibrio cholerae V51|Rep: Putative uncharacterized
           protein - Vibrio cholerae V51
          Length = 421

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 345 LLGHFLWLSCFMDEWVFINLYKKGFLYCKLRTNRIEKIMFLIFISLLNLS 196
           +L HF++L   +D   +I  ++  FL   L  N +  I+FLIF S+  L+
Sbjct: 81  ILAHFIFLGRLLDVHPYIYAHQTDFLDTPLNPNILGSIIFLIFNSIFPLA 130


>UniRef50_A6QTG5 Cluster: Dolichyl-di-phosphooligosaccharide-protein
           glycotransferase; n=14; Fungi/Metazoa group|Rep:
           Dolichyl-di-phosphooligosaccharide-protein
           glycotransferase - Ajellomyces capsulatus NAm1
          Length = 473

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 245 LFVLNLQYRNPFLYRL-IKTHSSIKHDSHRKWPKSGLLT 358
           +F   + Y+ PFL  + +K   +++H +H +WP+S  +T
Sbjct: 395 IFSFRVNYKRPFLTNVDVKEEVTVRHFAHDEWPRSWKIT 433


>UniRef50_Q09609 Cluster: Uncharacterized protein R07B1.9; n=2;
           Caenorhabditis|Rep: Uncharacterized protein R07B1.9 -
           Caenorhabditis elegans
          Length = 770

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 131 WCRGTPDRNEVPYYKNINFKFYSRHKE 51
           WC  T D N +P+YKN + KFY + +E
Sbjct: 263 WCLKTVDNNAMPFYKN-DLKFYYQGRE 288


>UniRef50_Q6KH60 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma mobile|Rep: Putative uncharacterized protein
           - Mycoplasma mobile
          Length = 199

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 83  YFYNKELRSYPVYHDTTHIFVLESDCTFYKIIIPFTSVDKFRREIKIRNIIFSI 244
           +F    L SY +   + H+ ++++   FY I+ PF  +  +R + K +N+ F +
Sbjct: 87  FFKQLNLNSYDLSWLSEHVLIIDA---FYGILKPFDLISPYRLDFKYKNLSFDL 137


>UniRef50_Q8IAQ7 Cluster: Putative uncharacterized protein PF08_0114;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PF08_0114 - Plasmodium falciparum (isolate 3D7)
          Length = 2572

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 173  FYKKCSRFLTQKYVWCRGTPDRNEVPYYKNINFKFYSRHKEFI 45
            +Y K ++     Y++ R   D+N + Y KN   +FY  H +F+
Sbjct: 2099 YYLKKNQQKQSTYLYVRKKSDKNNMYYIKNNRDEFYHNHNDFV 2141


>UniRef50_Q6CA20 Cluster: Yarrowia lipolytica chromosome D of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome D of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 505

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 245 LFVLNLQYRNP-FLYRLIKTHSSIKHDSHRKWPKSGLLT 358
           +F  NL Y+ P + +   KT ++I+H ++ +WP+S  +T
Sbjct: 430 VFTFNLDYKRPGYTFIEEKTRATIRHTANDEWPRSWEIT 468


>UniRef50_Q6VZV1 Cluster: CNPV046 ankyrin repeat protein; n=1;
           Canarypox virus|Rep: CNPV046 ankyrin repeat protein -
           Canarypox virus (CNPV)
          Length = 450

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 89  YNKELRSYPVYHDTTHIF-VLESDCTFYKIIIPFTSVDKFRREIKIRNIIFSILFVLNLQ 265
           YN  + +   Y  T   + +L  D    K++I   +   F+ +IK RNI+FS+L  L++ 
Sbjct: 198 YNPNVNAVDYYEKTPLYYAILRKDIELIKLLIHNGADINFKNKIK-RNILFSVLVTLDVD 256

Query: 266 Y 268
           +
Sbjct: 257 F 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,990,019
Number of Sequences: 1657284
Number of extensions: 10278788
Number of successful extensions: 19786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19783
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)