Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0169
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   1.7  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   2.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   3.0  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.9  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   5.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.8  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 HTYFCVRKRLHFL*NYYPLYFS 195
           + +FC+ +R HFL   + LY+S
Sbjct: 889 YKFFCIDERYHFLEKQWTLYYS 910


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = -2

Query: 333 FLWLSCFMDEWVFIN--LYKK---GFLYCKLRTNRIEKIMFLIFISLLNLSTEVKGI 178
           F++LS  +DE   ++  LY K   GF + K+ T R +     + ISL NLS  ++GI
Sbjct: 506 FIYLSKAIDEKNHMDATLYLKNLNGFRHDKMSTFRTQLYALRLDISLGNLSQAIEGI 562


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 218 KIRNIIFSILFVLNLQYRNPFLYRLIKTHSSIKHDSHRK 334
           K  NI F ++  L+  Y NP    L   +S I HDS R+
Sbjct: 168 KANNICFHLIG-LDTGYANPIFAALEVDYSEIDHDSTRE 205


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = +2

Query: 107 SYPVYHDTTHIFVLESDCTFYKIIIP--FTSVDKFRREIKIRNIIFSILFVLNLQYRNPF 280
           S P+     H+   E+D    ++     +  +  FRR+  + + +   + +  L + NP 
Sbjct: 159 SSPLTVYRNHLLTCETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNFLNPM 218

Query: 281 L----YRLIKTHS 307
           L    ++ +K HS
Sbjct: 219 LALSFFQAVKKHS 231


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 128 TTHIFVLESDCTFYKII---IPFTSVDKFRREIKIRNIIFSILFV 253
           T H F  ES+   +  +   I +    KF  EIK+R I +++LF+
Sbjct: 160 TQHEFEAESEKIIHHSLKGDIEYLPSFKFLLEIKVRTIDYALLFI 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 128  CRGTPDRNEVPYYKNINFKFYSRHKEFIKS*VRVIRV 18
            C  TP   E P   N+NF F+S++  F  + +RVI V
Sbjct: 1123 CSSTPFA-ECP---NLNFNFHSKNVNFPPADIRVISV 1155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,819
Number of Sequences: 5004
Number of extensions: 48640
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)