Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0169
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     29   2.3  
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310...    28   4.0  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    28   4.0  
01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096...    28   4.0  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     28   5.2  

>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 254  LNLQYRNPFLYRLIKTHSSIKHDSHRKWPKSGL 352
            L  Q+   +   L +  S++ HDS+RKW + GL
Sbjct: 1434 LPAQHTRQYAINLPEGSSTVGHDSNRKWGRQGL 1466


>09_02_0027 +
           3105963-3106276,3106298-3107027,3107069-3107134,
           3107192-3107324,3108985-3109088
          Length = 448

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 353 GARSWAISCGYRVLWTNGFLLICTKRDSCT 264
           G +S  +   Y+  W NG LL C     CT
Sbjct: 414 GGKSMRLLVDYQYTWNNGILLGCFPNHKCT 443


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 170 KIIIPFTSVDKFRREIKIRNIIFSILFVLNLQYRNPFLYRLIKTHSSIKH 319
           + ++PF S D F  ++ + N I SI  VL    R P     I   S   H
Sbjct: 298 RTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNH 347


>01_04_0047 -
           15408802-15409068,15409418-15409478,15409516-15409626,
           15409707-15409958,15410044-15410270,15410971-15411230,
           15411373-15412279,15412370-15412567
          Length = 760

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 315 FMDEWVFINLYKKGFLYCKLRTNRIEKIMFLIFISLLNLS 196
           F D ++   +Y+K  L   L     +K  F+ F+++LNLS
Sbjct: 614 FTDNYILFLVYQKDQLIISLDPAHYDKETFMEFLTILNLS 653


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 254  LNLQYRNPFLYRLIKTHSSIKHDSHRKWPKSGL 352
            L  Q+   +   L +  S++ HD++RKW + GL
Sbjct: 1511 LPAQHTRQYAINLPEGSSTVGHDNNRKWGRQGL 1543


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,925,516
Number of Sequences: 37544
Number of extensions: 250124
Number of successful extensions: 357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)