Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0169
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)                 28   5.4  
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               28   5.4  
SB_34533| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)           27   7.1  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_53094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_35912| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_45716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 107 SYPVYHDTTHIFVLESDCTF 166
           SYPVY D  H +  E DC F
Sbjct: 124 SYPVYEDNGHGYREEDDCAF 143


>SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)
          Length = 249

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 176 IIPFTSVDKFRREIKIRNIIFSILFVLNLQYRNPFLYRLIK 298
           +IPFTSV     E+++    FS L ++     NPF+Y LIK
Sbjct: 150 LIPFTSVCTPPFEMRL----FSRLLLITNSAANPFVYALIK 186


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 176 IIPFTSVDKFRREIKIRNIIFSILFVLNLQYRNPFLYRLIK 298
           +IPFTSV     E+++    FS L ++     NPF+Y LIK
Sbjct: 314 LIPFTSVCTPPFEMRL----FSRLLLITNSAANPFVYALIK 350


>SB_34533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 249 NRIEKIMFLIFISLLNLSTEVKGIIIL 169
           N +E ++FL+F SLL + T +  ++++
Sbjct: 23  NHVELVLFLVFASLLVIVTIINNLLVI 49


>SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)
          Length = 443

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 215 IKIRNIIFSILFVLNLQYRNPFLYRLIKTHSS 310
           ++ RN+I  ++ V+  +YR  +L    KTHS+
Sbjct: 324 VRCRNVIVCVIQVVRGRYRKTYLKNSEKTHST 355


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 184  GDNNFIKSAVAF*HKNMCGVVVHRIGT 104
            GD NFIK  V +   NM   ++ +IGT
Sbjct: 2488 GDGNFIKQLVNYDKDNMTDRILKKIGT 2514


>SB_53094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 235 FFYSIRSQLAVQESLFVQINKNPFVHKTR*PQEMAQERAPNYLT 366
           +F S+R Q   ++S+  +I++ PF       +E+ ++R+ N  T
Sbjct: 16  YFASVREQRVREQSICSRISRTPFAKFANNVREIREQRSRNSRT 59


>SB_35912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 184 GDNNFIKSAVAF*HKNMCGVVVHRIGT 104
           GD NFIK  V +   NM   ++ +IGT
Sbjct: 9   GDGNFIKQLVNYDKDNMTDRILKKIGT 35


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
 Frame = -2

Query: 312 MDEWVFINLYKKGFLYCK--------LRTNRIEKIMFLIFISLLNLSTEVKG 181
           +DE    N YK G LYCK        +  N++    F  F++L+     +KG
Sbjct: 427 LDEQGMTNQYKVGILYCKAGQSTEEEMYNNQVSSPAFDEFLNLIGKKVRLKG 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,549
Number of Sequences: 59808
Number of extensions: 321754
Number of successful extensions: 619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)