Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0169
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    29   1.5  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    29   1.5  

>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 131 WCRGTPDRNEVPYYKNINFKFYSRHKE 51
           WC  T D N +P+YKN + KFY + +E
Sbjct: 263 WCLKTVDNNAMPFYKN-DLKFYYQGRE 288


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 104 EVPYYKNINFKFYSRHKEFIKS*VRVIRVYI 12
           +VPY  ++ FKFY +  +FIK+ V +  +Y+
Sbjct: 645 KVPYVLHLRFKFYPQILDFIKTDVTMNELYL 675


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 104 EVPYYKNINFKFYSRHKEFIKS*VRVIRVYI 12
           +VPY  ++ FKFY +  +FIK+ V +  +Y+
Sbjct: 604 KVPYVLHLRFKFYPQILDFIKTDVTMNELYL 634


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,413
Number of Sequences: 27780
Number of extensions: 258399
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)