Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0169
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62960.1 68418.m07899 expressed protein                             27   5.8  
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu...    27   5.8  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    27   5.8  
At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative / leuc...    27   7.7  

>At5g62960.1 68418.m07899 expressed protein
          Length = 347

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 143 VLESDCTFYKIIIPFTSVDKFRREIKIRNI 232
           VL +DC F+ II+PF  +  +   + + N+
Sbjct: 216 VLLTDCVFWFIIVPFLEIHDYSLNVLVINM 245


>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 277

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 335 WPKSGLLTI*HNKNLKGCIWITSSQVYEAS 424
           W K+       N N++GC+W+    V  A+
Sbjct: 204 WSKAPFTAYYRNYNVEGCVWVNGKSVCPAN 233


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -2

Query: 330 LWLSCFMDEWVFINLYKKGFLYCKLRTNRIEKIMFLIFISLLNLSTEVKGIII 172
           L LSC  D  V I+  K   L  +    RIEK++   ++ L  L  + KG II
Sbjct: 389 LLLSCLEDLRVVIDRRKFDALIVETFGTRIEKLIQEKYLQLCELMDDEKGTII 441


>At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative /
           leucine--tRNA ligase, putative similar to SP|P36430
           Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA
           ligase) (LeuRS) {Bacillus subtilis}; contains Pfam
           profile PF00133: tRNA synthetases class I (I, L, M and
           V)
          Length = 973

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 306 EWVFINLYKKGFLY 265
           +W+F+ LYKKG  Y
Sbjct: 220 QWIFLQLYKKGLAY 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,762
Number of Sequences: 28952
Number of extensions: 227572
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)