Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0168
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   2.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   6.8  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 113 CVSYFVHVLQTHLLDYFSPNIATY-C--SSAMI 202
           CVS+F+ + ++H  D+F P    Y C  SSA+I
Sbjct: 597 CVSHFLAINESHFTDFFWPYSQFYFCILSSAII 629


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 285 IQIIC*IFNTCNIKCFSQNRYR 220
           +Q++  +F  CN KC S N +R
Sbjct: 822 LQVVPSLFPGCNSKCTSSNAFR 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,637
Number of Sequences: 5004
Number of extensions: 38106
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)