Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0168
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193           28   5.2  
02_03_0341 - 17948124-17948183,17948417-17948499,17948668-179487...    28   5.2  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    27   9.0  

>10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193
          Length = 246

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 50  NGFHLNSDDLGVSGERDPRILCVSYFVHVLQTHLLDYFSPNIATYCSSAMID 205
           +  H  S+D    G+ +     ++Y V  ++   L YF+     YC + ++D
Sbjct: 151 DSLHFRSNDTDEDGDENRHDRVLAYVVQPMEEKFLKYFTAIPHLYCFALVLD 202


>02_03_0341 -
           17948124-17948183,17948417-17948499,17948668-17948761,
           17948848-17948982,17949099-17949131,17949207-17949301,
           17949394-17949439,17949517-17949597,17949874-17949927,
           17950361-17950506,17952192-17952330
          Length = 321

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 251 ISNALAKIGIDVLSNYRSSQTNNKSLC*D*SSLGGEFV 138
           I+ A  K G  VL NY  S T+ + +C +    GG+ +
Sbjct: 85  IALAFGKAGCKVLVNYARSSTDAEEVCKEIEGFGGQAI 122


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 65  NSDDLGVSGERDPRILCVSYFVHV 136
           + DD+GV+G  + R+ C  Y+V V
Sbjct: 368 SEDDVGVAGLGEHRVRCCGYYVFV 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,370
Number of Sequences: 37544
Number of extensions: 227064
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)