Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0168
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)                     29   2.3  
SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)           29   3.0  
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             29   3.0  

>SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 641

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 89  PKHLGRQNSGE-IHCHTLTRWRYLVKKI 9
           P  LGRQNSGE +  HT     YL++++
Sbjct: 472 PSELGRQNSGENLQAHTRLHDPYLIQRL 499


>SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)
          Length = 446

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 100 SKNTMCKLLCTRLTNS--PPRLL*S*HSD-LLFVCDDR*LDRTSIPILAKAFDITSIENL 270
           S   +C   C  + NS   PR++ S  SD LLF       DRT +P+ A   D   I  L
Sbjct: 314 SVGALCATSCCLMCNSFAAPRVVYSMASDGLLFRFFAHVNDRTHVPVRAALADYVVIGTL 373

Query: 271 ANYLD 285
           A  LD
Sbjct: 374 AVLLD 378


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 100 SKNTMCKLLCTRLTNS--PPRLL*S*HSD-LLFVCDDR*LDRTSIPILAKAFDITSIENL 270
           S   +C   C  + NS   PR++ S  SD LLF       DRT +P+ A   D   I  L
Sbjct: 596 SVGALCATSCCLMCNSFAAPRVVYSMASDGLLFRFFAHVNDRTHVPVRAALADYVVIGTL 655

Query: 271 ANYLD 285
           A  LD
Sbjct: 656 AVLLD 660


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,624
Number of Sequences: 59808
Number of extensions: 275612
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)