Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0168
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 89  GERDPRILCVSYFVHVLQTHLLDYFSPNIATYCSSAMIDN*IEHRYL 229
           G R P +  ++    +L T LL Y  P+IA  C S M+   + H +L
Sbjct: 114 GTRSPTVEYLAARPEILITLLLGYEQPDIALTCGS-MLREAVRHEHL 159


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 92  ERDPRILCVSYFVHVLQTHLL 154
           E DP I  +S+  HVLQ H L
Sbjct: 241 EEDPDIFVISHLTHVLQPHQL 261


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 2    GTRFSSPNTAIGLGYGNGFHLNSDDLGVSGERDP 103
            GT  ++P+  IG+ +G   HL  D+  + GE  P
Sbjct: 1477 GTTVTTPSD-IGMTWGTSGHLGGDEESIGGEAAP 1509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,897,230
Number of Sequences: 27780
Number of extensions: 211339
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)