Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0168
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21620.1 68417.m03134 glycine-rich protein                          29   1.9  
At2g16040.1 68415.m01839 hAT dimerisation domain-containing prot...    28   4.3  
At1g80880.1 68414.m09490 pentatricopeptide (PPR) repeat-containi...    28   4.3  

>At4g21620.1 68417.m03134 glycine-rich protein
          Length = 131

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 20  PNTAIGLGYGNGFHLNSDDLGVSGERDPRILC 115
           P T +G GYG GF   S   G  G   P + C
Sbjct: 51  PGTGVGGGYGGGFGGPSGGFGKGGVVRPTVTC 82


>At2g16040.1 68415.m01839 hAT dimerisation domain-containing
          protein / transposase-related low similarity to
          transposase [Ipomoea purpurea] AB004906 GI:4063770
          Length = 382

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 86 KHLGRQNSGEIHCH 45
          +H+ R N GEIHCH
Sbjct: 11 EHIRRANKGEIHCH 24


>At1g80880.1 68414.m09490 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 253 TSIENLANYLDSFHQLGYVHCRVVLIFNH*PSGMTFILQRSSKCFEL 393
           +S+    ++  +FH+ G+VH +V+    H  S   F  +  S+ F++
Sbjct: 36  SSVSQNHSFSSAFHRAGHVHSQVLSYLPHFASSNRFSTKTISETFDI 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,269
Number of Sequences: 28952
Number of extensions: 195208
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)