Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0166
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 28 0.74
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 0.98
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.7
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 27 1.7
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 1.7
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 3.0
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 5.2
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 5.2
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 6.9
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.9
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 25 9.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 9.1
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.1
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.1
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 25 9.1
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 337 LNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTIDAIQK 456
L +L + G KV ++ ++ EEQ+ + DA+QK
Sbjct: 104 LEELKKLKGQKVIRLVHDESGDEEQNDDDGLTEAQDAVQK 143
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 0.98
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 316 TSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTIDAIQKL 459
+S + NK S+ + K T++ Q+P E S A + IDA ++
Sbjct: 404 SSPTKANTNK-SHQRSFSIPKATKDSQTPSENSAATLKQAAIDAYSQI 450
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 86 PGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFRAQL 265
PGA+I+PK P PF+ + LL + L HV+ S + + Q
Sbjct: 312 PGALISPKDPKLRVFPFTTKRATHSELLRCYK--ELVTPKISHVDSISIKAQEEERKRQA 369
Query: 266 NLSKEI 283
+ KEI
Sbjct: 370 EIEKEI 375
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 256 SATKSIKGNSMVSCVQMKSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQS 414
S+ +S +S SC+ SE S+S +LN+LSN K TQN + + S
Sbjct: 257 SSEQSDDSSSSSSCIS-DSEESSSDDELNELSNEK--KANSPTQNVDTSSKLS 306
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 1.7
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -2
Query: 306 HLHARNHRISFDRFSCALKFLLVCEEDANSTCPS--SFGPKFDDSEIGKRDSLGFLKQLK 133
H+ ++ HR + +F + + EDA+S S S G DSEI + + L +
Sbjct: 88 HMASKKHRDNLSKFQRNSRIKKLQSEDASSIASSTLSMGEPVVDSEIEEEEDLASQLTSR 147
Query: 132 GPS-SEFGLFGLIIAPGET 79
S S L G P +T
Sbjct: 148 AISLSNLSLHGRESEPSKT 166
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 265 KSIKGNSMVSCVQMKSETSA------SSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANA 426
+S++ +VSC S+ S +SY+ N+ +++ T++ + SP E NA
Sbjct: 268 QSLEHQRLVSCSDRNSQWSTVDSLSNTSYKKNRYTDIVPYNCTRVHLKRTSPSELDYINA 327
Query: 427 SKRTIDAIQKLQMQG 471
S + + QG
Sbjct: 328 SFIKTETSNYIACQG 342
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 304 MKSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTID 444
MK+ ++++S ++ S+ S + T + N +P EQ A + T+D
Sbjct: 426 MKTSSNSTSLDADRDSDTSSISDT--SSNSSAPHEQLNATSLASTVD 470
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 406 LPVIVYFGSFSLL*VLTCCSIYLIDK 329
+P +VYF S L +L C I L+DK
Sbjct: 486 VPFLVYFLSAPSLAILYSCFIILVDK 511
>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 38 VPNVQSPRFGKPLKVSPGAIINPKRPNSED 127
+ N+ G+ ++ SPG I PK+P+S +
Sbjct: 205 IANLVDEDTGELIRESPGMIREPKQPSSHE 234
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 406 EQSQANASKRTIDAIQKLQMQGLLVKKPRLD 498
E+ + A + +QKL+ + + KKPRLD
Sbjct: 60 EEHKREAFSLFEEIVQKLKRESTVYKKPRLD 90
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 352 NMSGLKVTKMTQNKQSPEEQSQANASKRTIDAIQKLQMQ 468
+MS K + +NK+SP + + N + ID +++++
Sbjct: 51 SMSAYKEKMLRKNKESPGLEGKGNLDDQGIDEENRVRLE 89
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 358 TCCSIYLIDKSWHSFPISSARKK 290
+CCS+Y I ++F I+ +KK
Sbjct: 34 SCCSLYTIRLDSYNFKIAKEQKK 56
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 164 LLPISESSNLGPNDDGHVEFASSSQTSKNFRAQLNLSKE 280
LLP S GPN+D ++ S+ + + A++N E
Sbjct: 415 LLPESFPKIFGPNEDESLDVESTRKEFEKLTAEINSGLE 453
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 129 PSSEFGLFGLIIAPGETF 76
PSS FGLF ++ ET+
Sbjct: 60 PSSPFGLFAYVVKRSETY 77
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 9.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 119 SEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFRAQLNLS 274
S GPF +P + +SESS+ G EFASS+ + ++ L +S
Sbjct: 140 SGSGPFKTPYRP----VAVSESSSRSSFSMGSSEFASSTWSQSPMQSSLYVS 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,861
Number of Sequences: 5004
Number of extensions: 45554
Number of successful extensions: 143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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