Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0166
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 31 0.43
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 1.7
07_01_0479 + 3606663-3607448 29 3.0
02_01_0758 + 5623953-5624171,5624251-5624430,5624533-5624591,562... 29 3.0
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215... 28 4.0
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 27 7.0
09_02_0476 + 9728729-9730739,9730930-9730991 27 7.0
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 27 7.0
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 27 7.0
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741... 27 9.2
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 316 TSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTIDAIQKLQ 462
TSAS+ QL+ + L V KM+ + PEE ++ A ++ + A ++L+
Sbjct: 173 TSASAEQLDMAPSNDNLAVEKMSSSLSEPEESFESEAFQKEMVAEEQLE 221
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 32 PPVPNVQ-SPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLG 196
PP P+ SP GKP K P + K P + +KP+ S+ P ES+N G
Sbjct: 57 PPSPSPSPSPPAGKPTKPHPESTPPTKTPARSKPAAAAAEKPRPSVAP--ESTNGG 110
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 29 RPPVPNVQSPRFGKP--LKVSPGAIINPKRPNSEDGPF 136
RPP+PN+ +P P ++ PG + P RP PF
Sbjct: 150 RPPMPNLSAPPVAYPQVVRPPPGQMPPPMRPPQMPIPF 187
>02_01_0758 +
5623953-5624171,5624251-5624430,5624533-5624591,
5625243-5625390,5625476-5625547,5625636-5625746,
5626615-5626882,5627222-5627265,5627393-5627477,
5627554-5627600
Length = 410
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 65 GKPLKVSPGAIINPKRPNS--EDGPFSCFKKPKESLLPISESSNLGPNDDGHVE 220
G+P+++S ++ N + P + KKP+ LP S GP D H++
Sbjct: 293 GRPVRLSLDSLDEKVSQNGVKKANPSNAVKKPQRKSLPKLPSEETGPFDSSHLK 346
>09_01_0144 -
2158924-2158962,2159180-2159315,2159393-2159499,
2159594-2160055,2162755-2162836,2164222-2164346,
2164555-2164623,2164935-2165056,2165823-2165856
Length = 391
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 185 SNLGPNDDGHVEFASSSQTSKNFRAQLNLSKEILWFLAC 301
S+ PN DG++E+ S ++++K + N K+I C
Sbjct: 271 SSTKPNSDGNMEYYSVNESAKRLKVDRNDDKKIAHEAIC 309
>10_08_0585 - 18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 11 PNTARLRPPVPNVQSPRFGKPLKVS--PGAIINPKRPNSEDGPFSCFKKPKESLLPISES 184
PN+A L VP V PRF K L+VS +++ ++ S K +L+ +
Sbjct: 839 PNSADLEWAVPAVSYPRFVKLLQVSCYSKPVLSGLVISTGGLQESLRKASTSALVDYLQD 898
Query: 185 SNLGPNDDG 211
S++ ND+G
Sbjct: 899 SDINTNDEG 907
>09_02_0476 + 9728729-9730739,9730930-9730991
Length = 690
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 186 DDSEIGKRDSLGFLKQLKGPSSEFGLFGLIIAPGE-TFKGF 67
DD+ +G + G ++ F +G + PG TFKG+
Sbjct: 373 DDANVGNDSFTSYASNANGAAAGFESYGKSVNPGSVTFKGY 413
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = +2
Query: 11 PNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSN 190
P +A P P PR PL +P +P PN P S K P +S+
Sbjct: 130 PYSAPSPTPTPTHTQPRPSPPLLPTPATAADPANPNKARHPSS--NKSSSPAAPRRTNSS 187
Query: 191 LGP 199
P
Sbjct: 188 SSP 190
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 8 RPNTARLRPPVPNVQSPR-FGKPLKVSPGAIINPKRPN 118
+PN AR P + PR P + P I+P RPN
Sbjct: 266 KPNVARTIDPPRPIDPPRPIDPPRPIDPPRPIDPPRPN 303
>03_06_0116 +
31773295-31773603,31773800-31773946,31774080-31774158,
31777558-31778180
Length = 385
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 97 YSSRRNFQRFPKSGALYIGHWWSQPCGIWP 8
+S R + PK L + HWW WP
Sbjct: 228 FSKRTKKGKLPKEARLKLLHWWELHYDKWP 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,409
Number of Sequences: 37544
Number of extensions: 272547
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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