Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0166
(526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9045| Best HMM Match : DUF843 (HMM E-Value=0.17) 30 1.3
SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_52933| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48) 29 1.8
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5) 29 2.3
SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001) 29 2.3
SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 29 3.1
SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08) 28 4.1
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_35054| Best HMM Match : Lig_chan (HMM E-Value=1.2e-32) 27 7.2
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 27 9.5
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_9045| Best HMM Match : DUF843 (HMM E-Value=0.17)
Length = 338
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 271 IKGNSMVS-CVQMKSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTIDA 447
++G SM+ C+Q K +A + K TKM ++ EE+ QA + D
Sbjct: 150 LEGMSMLQDCIQQKKGLAADEEKFRKYIGDLKRHSTKMEESDAQTEEEIQAIILSLSADI 209
Query: 448 IQKLQMQGLLVK 483
+ ++ M LL++
Sbjct: 210 MMRMMMVLLLLR 221
>SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 265 KSIKGNSMVSCVQMKSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRT 438
KSI G + SCV+ SS+ N N S + TK+ + +E K T
Sbjct: 116 KSIVGQILASCVEQTDRNKYSSFFYNGNPNFSTWEETKLCADNDKEKETDVKTCDKFT 173
>SB_52933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 60 DLGNL*KFRLEL*LIQKDRIQRTVLLVVLKNPKSLFYLFPNHQIWVRTTMGTLSSHP 230
D NL K R E Q ++ + V++VV+ P S+F PN +W+ G S+HP
Sbjct: 217 DHQNLEKTRRE----QHFKVTKKVIIVVICFPISMF---PNQVLWLWVDDGDFSNHP 266
>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
Length = 947
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 107 KRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFRAQLNLS 274
K S DG + + ES L + S G + G + SSS S N+ + LS
Sbjct: 824 KLVESRDGHMTITDESSESGLLVDSGSGSGSKESGFADSESSSPFSGNYEVDVELS 879
>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
Length = 279
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 116 NSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFR-AQLNLSK 277
N D + F P P+SE +L P +GH SQ S + A+LN SK
Sbjct: 13 NIADTINTAFLSPMNVFEPLSEKCHLNPESEGHAYTLQVSQLSVLKKLAELNPSK 67
>SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)
Length = 534
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 116 NSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFR-AQLNLSK 277
N D + F P P+SE +L P +GH SQ S + A+LN SK
Sbjct: 448 NIADTINTAFLSPMNVFEPLSEKCHLNPESEGHAYTLQVSQLSVLKKLAELNPSK 502
>SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 116 NSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFR-AQLNLSK 277
N D + F P P+SE +L P +GH SQ S + A+LN SK
Sbjct: 429 NIADTINTAFLSPMNVFEPLSEKCHLNPESEGHAYTLQVSQLSVLKKLAELNPSK 483
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 35 PVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKE 160
P V +P P P +P+ PNS G F+ F+KP E
Sbjct: 998 PDQQVLAPGPSSPRSAQPSGR-SPEEPNSSLGRFATFRKPPE 1038
>SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)
Length = 948
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 116 NSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFR-AQLNLSK 277
N D + F P P+SE +L P +GH SQ S + A+LN SK
Sbjct: 349 NIADTINTAFLSPMNVFEPLSEKCHLTPESEGHAYTLQVSQLSVLKKLAELNPSK 403
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 47 VQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNL 193
V +P FG+P S N + P +DG + P+ S +SE +L
Sbjct: 367 VVTPEFGRPESESDDMFSNTEEPLLDDGNSPRGRTPEGSSQDVSEDEHL 415
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = +2
Query: 11 PNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSE-DGPFSCFKKPKESLLPISESS 187
P T P PN+ S +FG P + P P E P PK+ P S
Sbjct: 949 PPTFNFSVPKPNLPSYKFGSPARDLPSTAYKFGTPKQELHSPTPTHSTPKQK--PSSMEF 1006
Query: 188 NLGPNDD 208
G +D
Sbjct: 1007 QFGTQED 1013
>SB_35054| Best HMM Match : Lig_chan (HMM E-Value=1.2e-32)
Length = 496
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 168 YLFPNHQIWVRTTMGTL-SSHPLHKLVKTLERN 263
Y FP +W T SS LHK KTL RN
Sbjct: 377 YGFPYSYVWTNKPHPTWPSSRVLHKQAKTLRRN 409
>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1328
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 256 SATKSIKGNSMVSCVQMKSETSASSYQLNKLSNMSGLKVTKMTQN 390
S TKS +S +S + + E S + LSN S L + T N
Sbjct: 698 SRTKSQASSSNLSSARSRREASGKDSSASNLSNKSNLSMRLFTPN 742
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 521 IFVRCVSLSNRGFFTKRPCICSFCIASIVRLDAFAWLCSSGDCLFWVIFVTL 366
IFV +S+S R C+C+FCI ++ + +LC C+F +FV+L
Sbjct: 1904 IFVFALSVSLRYI-----CLCAFCIFAL--SVSLRYLCLCAICIF-AVFVSL 1947
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,808
Number of Sequences: 59808
Number of extensions: 330332
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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