Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0166
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.0
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 29 2.7
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 29 2.7
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 29 2.7
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 29 2.7
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 28 4.7
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 28 4.7
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 28 4.7
Z50070-9|CAA90403.1| 90|Caenorhabditis elegans Hypothetical pr... 27 6.2
U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/... 27 6.2
Z81118-2|CAB03324.2| 318|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical
protein C27D8.2 protein.
Length = 500
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/87 (21%), Positives = 35/87 (40%)
Frame = +1
Query: 262 TKSIKGNSMVSCVQMKSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTI 441
+KS K S +C++ + N + + +KV N + E +++ A +
Sbjct: 373 SKSTKKKSKCACIEYVKNKLTEKKKKNPFKDPNAVKVKPPGTNSKISETSTKSTAVISKM 432
Query: 442 DAIQKLQMQGLLVKKPRLDSETHRTKI 522
++ K+Q L K RTKI
Sbjct: 433 SSLSKIQPTSTLEKNLHKRRTGKRTKI 459
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 11 PNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLP 172
P R PP+P P G P KV GA P P + + ++L+P
Sbjct: 967 PVPPREAPPIPKRNPPPLGAPPKVPEGARAPPPLPPRPKVKTTAVDETPQNLVP 1020
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 11 PNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLP 172
P R PP+P P G P KV GA P P + + ++L+P
Sbjct: 967 PVPPREAPPIPKRNPPPLGAPPKVPEGARAPPPLPPRPKVKTTAVDETPQNLVP 1020
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 11 PNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLP 172
P R PP+P P G P KV GA P P + + ++L+P
Sbjct: 967 PVPPREAPPIPKRNPPPLGAPPKVPEGARAPPPLPPRPKVKTTAVDETPQNLVP 1020
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 307 KSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTIDAIQKLQ 462
K E + + N+L+ ++ LKV + + PE+ ++ SK D KL+
Sbjct: 363 KLEKPSELKEFNELAQLNELKVLSQPKRSEKPEKPNEYERSKNLDDGSIKLE 414
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 38 VPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLL--PISESSNLGPNDDG 211
+P + G P S A++ PK + ED P + P + + P + +++ DG
Sbjct: 589 LPTIAPNAAGTPPPQSVAAMLEPKEESEEDEPSTSASVPFQRRMNSPQTHATSYARRSDG 648
Query: 212 HVEFASSSQTSKNFRA 259
S S++S++ RA
Sbjct: 649 K-RHPSKSRSSRDDRA 663
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 35 PVPNVQSPRFGKPLKVSPGAIINPKRPNSEDG--PFSCFKKPKES 163
P N QSP G P +S G P P + +G P F KP+ S
Sbjct: 67 PYYNTQSPLTGTPPSMSYGTPQIPAPPPTSNGSAPMFNFSKPRNS 111
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 35 PVPNVQSPRFGKPLKVSPGAIINPKRPNSEDG--PFSCFKKPKES 163
P N QSP G P +S G P P + +G P F KP+ S
Sbjct: 129 PYYNTQSPLTGTPPSMSYGTPQIPAPPPTSNGSAPMFNFSKPRNS 173
>Z50070-9|CAA90403.1| 90|Caenorhabditis elegans Hypothetical
protein F43G6.10 protein.
Length = 90
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 2 GTRPNTARLRPPVPNVQSPRFGKPLKVSPGAIINP 106
G RPN L+PP+P Q R G P+ P P
Sbjct: 13 GQRPN---LQPPLPPAQVERIGDPIVRDPAEPAQP 44
>U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 19
protein.
Length = 944
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 328 SYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRTIDAIQKLQMQGLLVKKPRL 495
++ L + S ++ T+ +NK+SP + S +++S T + L+ + + K RL
Sbjct: 386 AFLLKRKLRKSNVRRTESPENKRSPVQSSSSSSSGSTEGNVSSLRSRSDVRKSTRL 441
>Z81118-2|CAB03324.2| 318|Caenorhabditis elegans Hypothetical
protein T10G3.1 protein.
Length = 318
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 373 TKMTQNKQSPEEQSQANASKRTIDAIQKLQMQ 468
T+ T+N++ PEE+ AN K + + I+KLQ +
Sbjct: 203 TEDTENEE-PEEECLANKEKLSDEVIEKLQAE 233
>Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical
protein E02A10.3 protein.
Length = 202
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -2
Query: 291 NHRISFDRFSCALKFLLVCEEDANSTCPSSFGPKFDDSE---IGKRDSLGFLKQL 136
NH+I FD F ++ L + + + N F FD SE I K+D L++L
Sbjct: 106 NHQIDFDEFCVVMRRLTMKKSNWNEVVKECF-TVFDRSENGGISKKDFRFILREL 159
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 141 VLKNPKSLFYLFPNHQIWVRTTMGTLSSHPLHKLVKTLER 260
V+++PK Y N +W+RTT+ ++ L LE+
Sbjct: 440 VIQSPKDPAYFITNGSVWLRTTVKFQNASRYELLCPLLEQ 479
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 141 VLKNPKSLFYLFPNHQIWVRTTMGTLSSHPLHKLVKTLER 260
V+++PK Y N +W+RTT+ ++ L LE+
Sbjct: 440 VIQSPKDPAYFITNGSVWLRTTVKFQNASRYELLCPLLEQ 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,001
Number of Sequences: 27780
Number of extensions: 257206
Number of successful extensions: 805
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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