Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0166
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   5.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   5.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   5.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   5.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   5.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   5.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   5.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 11  PNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGP 133
           P+     PP+PN+ +     PL   PG++       S  GP
Sbjct: 411 PSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 105 QKDRIQRTVLLVVLKNPKSLFYLFPNHQ 188
           QK   +R++   +L+ P+S+F    +HQ
Sbjct: 373 QKSEPRRSIYSSLLRYPRSIFRQTDDHQ 400


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 112 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 142


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 103 INYSSRRNFQRFPKSGALYIGHWWSQPCGIW 11
           + Y +  N ++ P    +Y G++  +P G W
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPRPMGPW 138


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 35  PVPNVQSPRFGKPLKVSPGAIINPKRPNSED-GPFSCFKKPKESLLPISESSNLG 196
           P+  V   + GKPL +   A++  +    ED G + CF +  +     +    LG
Sbjct: 335 PIKTVSWLKDGKPLGLEE-AVLRIESVKKEDKGMYQCFVRNDQESAQATAELKLG 388


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 174 FPNHQIWVRTTMG 212
           FP+HQI V T+ G
Sbjct: 918 FPHHQIQVSTSAG 930


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 433 RTIDAIQKLQMQGLLVKKPRL 495
           RT+DA + L+   LL + P+L
Sbjct: 27  RTVDAQRSLEFFDLLPEDPKL 47


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 116 NSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFR 256
           N E G  S     ++ + PI+ S   G     ++   S++QTS   R
Sbjct: 576 NDEGGKTSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSASR 622


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 147 KNPKSLFYLFPNHQIWV 197
           KNP  L+Y+    Q+W+
Sbjct: 590 KNPVQLWYVPSLDQVWI 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,620
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)