Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0166
(526 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62200.1 68416.m06988 expressed protein contains Pfam profile... 32 0.21
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 31 0.47
At1g26450.1 68414.m03226 beta-1,3-glucanase-related similar to b... 30 0.83
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 30 1.1
At5g35580.1 68418.m04236 protein kinase, putative similar to aux... 29 1.9
At2g43710.1 68415.m05433 acyl-[acyl-carrier-protein] desaturase ... 29 2.5
At1g49030.1 68414.m05497 expressed protein similar to PGPS/D12 [... 29 2.5
At3g30230.1 68416.m03820 myosin heavy chain-related similar to M... 28 3.3
At2g43710.2 68415.m05434 acyl-[acyl-carrier-protein] desaturase ... 28 3.3
At5g51800.1 68418.m06423 expressed protein 28 4.4
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 28 4.4
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 27 5.8
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 27 5.8
At1g30240.1 68414.m03699 PELP1-related contains weak similarity ... 27 5.8
At5g17340.1 68418.m02031 expressed protein weak similarity to M3... 27 7.7
At5g14990.1 68418.m01758 hypothetical protein 27 7.7
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 27 7.7
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 27 7.7
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 27 7.7
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 27 7.7
At1g78420.1 68414.m09138 expressed protein 27 7.7
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta... 27 7.7
>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 673
Score = 32.3 bits (70), Expect = 0.21
Identities = 26/86 (30%), Positives = 36/86 (41%)
Frame = +2
Query: 8 RPNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESS 187
RP A +RPP NV P + L G P + DGP + P LL + S
Sbjct: 338 RPGAATMRPPYGNVFRPYRPENLNPPVGNGFRPMQHPRNDGP----RFPSPPLLTPLDIS 393
Query: 188 NLGPNDDGHVEFASSSQTSKNFRAQL 265
NL + ++ S +Q NF Q+
Sbjct: 394 NLSVS-----QYPSQTQNRPNFNPQV 414
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 31.1 bits (67), Expect = 0.47
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 35 PVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPND--- 205
PVPN S R P INP RP +++ + ++ +L ++ GPN+
Sbjct: 207 PVPNQGSNRVRPMPMTRPNRTINPNRPIAQNAAVNGPRRQNNNLGYNAQVGPNGPNELTG 266
Query: 206 ----DGHVEFASSSQTSKNFRAQLNLSKEI 283
DG S+S T+K F +++ ++
Sbjct: 267 QGSMDGSGYNGSASATNKEFDVDVDVDVDV 296
>At1g26450.1 68414.m03226 beta-1,3-glucanase-related similar to
beta-1,3-glucanase GI:15150341 from [Camellia sinensis];
C-terminal homology only
Length = 197
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 41 PNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPN 202
P P G SPG NP NS + KP S + +S+ +GP+
Sbjct: 112 PTAGYPSTGNSTTASPGTT-NPSTGNSTNSTLPTNDKPTSSTITFPDSTTMGPS 164
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 292 SCVQMKSETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASKRT 438
SC+Q E+S S +N S S + + + SP++ S+ N+ K +
Sbjct: 1445 SCIQSLKESSCDSSVVNSPSKSSEENLPAKSSEENSPKKSSEENSPKES 1493
>At5g35580.1 68418.m04236 protein kinase, putative similar to
auxin-regulated dual specificity cytosolic kinase
[Lycopersicon esculentum] gi|14484938|gb|AAK62821
Length = 457
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/87 (19%), Positives = 38/87 (43%)
Frame = +2
Query: 5 TRPNTARLRPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISES 184
TRP+ + + + +++ + P+ + + R ++ F KP+++ L +
Sbjct: 354 TRPDISTVVSVLQDIKDYKDDIPIGIFTYTVPTKPRREVKETSLQNFDKPRQTSLQNFDK 413
Query: 185 SNLGPNDDGHVEFASSSQTSKNFRAQL 265
D H +F S + T++N R L
Sbjct: 414 PRNVSTTDNHQKFRSPAHTARNHRITL 440
>At2g43710.1 68415.m05433 acyl-[acyl-carrier-protein] desaturase /
stearoyl-ACP desaturase (SSI2) identical to gi:15149310;
contains Pfam profile PF03405: Fatty acid desaturase;
identical to cDNA stearoyl ACP desaturase (SSI2),
SSI2-FAB2 allele, GI:15149309
Length = 401
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 29 RPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFS 139
RPP P+ +SP+F SP PK S PF+
Sbjct: 21 RPPTPSFRSPKFLCLASSSPALSSGPKEVESLKKPFT 57
>At1g49030.1 68414.m05497 expressed protein similar to PGPS/D12
[Petunia x hybrida] GI:4105794; contains Pfam profile
PF04749: Protein of unknown function, DUF614
Length = 224
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 8 RPNTARLRPPVPNV--QSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLL 169
+PN +RP P QS F +P VS ++ + N G F C + +L+
Sbjct: 49 QPNQVPMRPGPPTYINQSATFNQPYGVSMAGPVHTQPSNWTSGLFDCMNDGENALI 104
>At3g30230.1 68416.m03820 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 527
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 32 PPVPNVQSP--RFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLP 172
PP+P V SP R K G + +E F CFK K+++LP
Sbjct: 231 PPLPVVTSPPPRLSGE-KTDRGVTPRQEAMETEGNVFRCFKTQKDAILP 278
>At2g43710.2 68415.m05434 acyl-[acyl-carrier-protein] desaturase /
stearoyl-ACP desaturase (SSI2) identical to gi:15149310;
contains Pfam profile PF03405: Fatty acid desaturase;
identical to cDNA stearoyl ACP desaturase (SSI2),
SSI2-FAB2 allele, GI:15149309
Length = 401
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 29 RPPVPNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFS 139
RPP P+ +SP+F SP PK S PF+
Sbjct: 21 RPPTPSFRSPKFLCLASSSPALSSGPKSVESLKKPFT 57
>At5g51800.1 68418.m06423 expressed protein
Length = 972
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +2
Query: 71 PLKVSPGAIINPKRP----NSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQ 238
P SPGA + PKRP +S P P S +P + + + P V ASS++
Sbjct: 53 PTVSSPGAPVIPKRPRFSTSSGLSPPQWKALPSPSTVPTASTISSSPTPSTAVVTASSTE 112
Query: 239 TS 244
T+
Sbjct: 113 TA 114
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +2
Query: 2 GTRPNTARLRPPVPNVQSPRFG---KPLKVSP--GAIINPKRPNSEDGP 133
G P +RPP P P++G +P+ + P G + P P+ GP
Sbjct: 171 GGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQGP 219
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 131 PFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNF 253
P SC ++PKE + +ESSN + ++ S Q+ K F
Sbjct: 526 PDSCCQEPKEEVFHSAESSN-NEDSSAMIDALGSPQSEKPF 565
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +2
Query: 44 NVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEF 223
N Q P P +VSP A + RP ++ P + L SES N
Sbjct: 215 NTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYK 274
Query: 224 ASSSQTSKNFRAQL 265
S S+ ++N++ +L
Sbjct: 275 ESISKNTRNWKDRL 288
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +2
Query: 44 NVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEF 223
N Q P P +VSP A + RP ++ P + L SES N
Sbjct: 215 NTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYK 274
Query: 224 ASSSQTSKNFRAQL 265
S S+ ++N++ +L
Sbjct: 275 ESISKNTRNWKDRL 288
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +2
Query: 44 NVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEF 223
N Q P P +VSP A + RP ++ P + L SES N
Sbjct: 215 NTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYK 274
Query: 224 ASSSQTSKNFRAQL 265
S S+ ++N++ +L
Sbjct: 275 ESISKNTRNWKDRL 288
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 5 TRPNTARLRPPVPNVQSPRFGKP---LKVSPGAIINPKRPNSEDGPFSCFKKP 154
TRP TA PP P V + R G+P + PG+ P P+S P + P
Sbjct: 55 TRPFTASGPPPAPPVGTMRPGQPSPFVSQIPGS--RPPPPSSNSFPSPAYGPP 105
>At1g30240.1 68414.m03699 PELP1-related contains weak similarity to
PELP1 [Homo sapiens] gi|21426922|gb|AAC17708
Length = 873
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 146 KKPKESLLPISESSNLGPNDDGHVEFASSSQTSKNFRAQLNLSKE 280
K P+ESL P+++ P DG+ E S +Q ++ + +L +E
Sbjct: 791 KVPEESLGPVTDKDVTAPK-DGYEEVVSGTQEGEDLAVKDSLMEE 834
>At5g17340.1 68418.m02031 expressed protein weak similarity to M3.4
protein [Brassica napus] GI:4574746
Length = 160
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 509 CVSLSNRGFFTKRPCICSFCIASIVRLD 426
C++ + FFT++P I C ASI ++D
Sbjct: 95 CLADIAKAFFTRKPAIGLDCCASIQKMD 122
>At5g14990.1 68418.m01758 hypothetical protein
Length = 666
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 265 KSIKGNSMVS--CVQMKSETSASSYQLNK--LSNMSGLKVTKMTQNKQSPEEQSQANASK 432
K K NS+ S ++ K +T L L+ + GLK ++T N+++ EE+ + + K
Sbjct: 419 KMQKNNSVFSDNAIEEKEDTEIRLMILEDTYLTLLKGLKADEITNNRKAEEEEEEIKSEK 478
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 83 SPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQ 238
SP A+ +P R S D P S P+E P+S SS+ P +D + +SS +
Sbjct: 29 SPAAV-SPGREPSTDSPLSPSSSPEED-SPLSPSSS--PEEDSPLPPSSSPE 76
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 262 TKSIKGNSMVSCVQMK---SETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASK 432
T + ++M+ C++ + + + SSYQ ++ SG+ M N + S A +K
Sbjct: 132 THGLASSNMLHCLRPRRHFANSEKSSYQ-EGVNVPSGMMYVSMDANSRGARNASMATNTK 190
Query: 433 RTI 441
RTI
Sbjct: 191 RTI 193
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 262 TKSIKGNSMVSCVQMK---SETSASSYQLNKLSNMSGLKVTKMTQNKQSPEEQSQANASK 432
T + ++M+ C++ + + + SSYQ ++ SG+ M N + S A +K
Sbjct: 132 THGLASSNMLHCLRPRRHFANSEKSSYQ-EGVNVPSGMMYVSMDANSRGARNASMATNTK 190
Query: 433 RTI 441
RTI
Sbjct: 191 RTI 193
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/56 (30%), Positives = 21/56 (37%)
Frame = +2
Query: 41 PNVQSPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDD 208
PN L PG I P P+S P S P+ S P S+ PN +
Sbjct: 66 PNTPPSSSYPGLSPPPGPITLPNPPDSSSNPNSNPNPPESSSNPNPPDSSSNPNSN 121
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 71 PLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISESSNLGPNDDGHVEFASSSQTSKN 250
P +V+P I+ P P+S G SC + ESS+ N + +V +S S N
Sbjct: 256 PPRVTP--IVEPATPSSSSGGLSCAISALAERQMVGESSS--HNHNHNVNVSSYSMLPGN 311
Query: 251 FRAQLNLSKEI 283
+ ++ +E+
Sbjct: 312 CDSYYDIEQEV 322
>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 416
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Frame = +2
Query: 17 TARLRPPVPNVQ--SPRFGKPLKVSPGAIINPKRPNSEDGPFSCFKKPKESLLPISE--S 184
T L+P P Q +P P V + P DGP S P+ S+LP
Sbjct: 318 TRSLQPRCPGPQQFAPLLAPPDTVPRDVMYAPAPSPDFDGPGSIASSPRSSMLPGGGILP 377
Query: 185 SNLGPNDDGHVEFASSSQTSKNF 253
N G + AS+S S F
Sbjct: 378 GNPANGPAGSISTASASSVSYFF 400
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,594
Number of Sequences: 28952
Number of extensions: 236608
Number of successful extensions: 838
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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