Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0165
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    30   0.24 
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    28   0.73 
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   2.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.0  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  

>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 244 VLQYGDQETDYVQDYPGISRVKLKQFSEHRIRVVGT*GSGK 122
           +LQ  D   +YV  +P +  V +    + RI VVG  G+GK
Sbjct: 517 ILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGK 557


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 261 RCRKNTIRGQEF*FHKSTRTAKRRTENESLYTDKSTLHLLVYRFL 395
           R +K  + G E  F +   TA+ + ENE+LY+    L + + RF+
Sbjct: 34  RRKKRGLSGWEPYFQEPELTAEEKLENETLYSRNIPLTVRMERFI 78


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 515 HIMSSLVASLAALFRVTLQ*PWSASKLSLSFLLHFVSIAAEKAVHEKVQSRL 360
           +++ ++V  LAA    +   P+  +    SF+ +F+++A    +H+K  SRL
Sbjct: 134 YVLFAIVCLLAAALTSS---PYKWAYYGFSFVGYFIALAHSVVLHKKYASRL 182


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 265  QRQLFR*VLQYGDQETDYVQDYPGISRVKLKQFSEHR 155
            QR +F  VL+YG    D +  Y     V +  FSE R
Sbjct: 2000 QRDMFNEVLKYGSYIVDALASYKQPVFVYIPPFSELR 2036


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -1

Query: 490 VLRPCSE*RYNDR----GALPNYRSPSYSISFPL 401
           +L PC    YN R      L +YR  SYS+ FPL
Sbjct: 30  ILSPCY--CYNKRIRPFRGLTSYRQASYSLGFPL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,154
Number of Sequences: 5004
Number of extensions: 41104
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)