Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0165
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042           30   1.3  
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    29   1.7  
07_01_0043 + 343777-343953,345198-346716,346831-346977,347378-34...    29   1.7  
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847...    29   3.0  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    28   3.9  
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900...    27   9.0  

>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
          Length = 511

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -2

Query: 507 ELLSGQSCGPVQSNVTMTVERFQTIALLLTPF------RFHCCRESGTREGAK 367
           E+LSG+ C     +    V+  Q IAL + P       R  CC+     EG K
Sbjct: 442 EVLSGERCNTTGFDAATKVQMIQVIALKMNPAIWKRAPRRQCCKMQNANEGDK 494


>10_08_0731 +
           20161962-20163628,20163721-20163862,20164181-20164490,
           20164566-20166466,20166557-20166650,20166953-20167440,
           20167919-20168599,20168870-20168944,20170148-20170210,
           20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 29  DDGAEDRLQGVSRMVEVCAWL----CVRSCRGVRQFATALSAYNA 151
           DDG+ +   G S  +EV A L    C++ C G      +LSA NA
Sbjct: 282 DDGSRNSSDGASHRIEVSACLSNQPCLKPCSGELAEEVSLSAANA 326


>07_01_0043 +
           343777-343953,345198-346716,346831-346977,347378-347940
          Length = 801

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 205 PEHSRSP-DHHTAGPTGTADVVERILFED 288
           P HS+S  D H AGP+ + DV ER+ FED
Sbjct: 301 PHHSKSNLDVHCAGPS-SPDVYERMNFED 328


>01_06_0555 -
           30182818-30183169,30183268-30183674,30183804-30184773,
           30184829-30184902,30184941-30185084,30185186-30185365,
           30185448-30185988,30186081-30186538,30187723-30187901,
           30187998-30188052,30188217-30188468
          Length = 1203

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 509 MSSLVASLAALFRVTLQ*PWSASKLSLSFLLHFVSIAAEKAVHEKVQSRLISIQTLILSA 330
           M  +VA   AL  + +Q        +   +L  VS    KA H+  Q  + ++    +  
Sbjct: 777 MGLIVAWKLALVMIAVQPTTMICYYAKKIVLSNVSRDLAKAQHQSTQIAIEAVYNHRMVT 836

Query: 329 SFGCSSRFM 303
           SFGCSS+ +
Sbjct: 837 SFGCSSKVL 845


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 135 RAVANCLTPLQERTHSHA 82
           RAVA+CL+P    TH+HA
Sbjct: 44  RAVADCLSPPAPHTHTHA 61


>10_05_0085 -
           9005539-9005922,9006207-9006463,9006707-9006883,
           9007349-9007490,9007814-9007904,9009024-9010942
          Length = 989

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 246 YRNS*RCRKNTIRGQEF*FHKSTRTAKRRTENESL 350
           Y NS +C    IR +E  F+K     K+  +NE +
Sbjct: 196 YNNSMKCEWTKIRDKELYFYKELARVKKVKKNEDM 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,861,305
Number of Sequences: 37544
Number of extensions: 275224
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)