Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0165
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)               31   0.75 
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_21469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_31193| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           27   9.3  

>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
          Length = 730

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 80  CAWLCVRSCRGVRQFATALSAYNAYPVFTKLLKLDTRNPRIVLN 211
           CAWL   S  G    A     Y++YP+   L++   + P ++LN
Sbjct: 464 CAWLFGGSTEGYTCLAPNFKGYDSYPILEFLIRHGVK-PNVILN 506


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +2

Query: 80  CAWLCVRSCRGVRQFATALSAYNAYPVFTKLLKLDTRNPRIVLNIVGLLITILQDLPEQL 259
           C WL   S  G    A     Y++YP+   L++   + P +V N V ++   + +L   +
Sbjct: 702 CVWLIGGSTEGYTCLAHNFKGYDSYPILEYLIRNGVK-PNVVFNGVKVMCLSVPELKVTM 760

Query: 260 TLSKEYY 280
             +  ++
Sbjct: 761 KCTLNFF 767


>SB_21469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 184 HEKSQDSPE-HSRSPDHHTAGPTGTADVVERILFEDKSFNFINLLEQPNDALRMRVCILI 360
           HE+ ++  E  S S    T  PT   D +  + +    F  I+    PN+A ++  C L+
Sbjct: 110 HEEDRNKSESQSYSAVKFTKNPTSD-DAIFEMQYLPSGFIHISSRISPNNANKVHTCFLV 168

Query: 361 SLLCT 375
           ++L T
Sbjct: 169 NVLHT 173


>SB_31193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 47  RLQGVSRMVEVCAWLCVRSCRGVRQFAT 130
           +  G SR+   CA  C + C G+  FAT
Sbjct: 40  KASGCSRLPAPCAKKCKKLCEGIGSFAT 67


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 460 NDRGALPNYR--SPSYSISFPLLQRKRYTRRCKVDLSVY 350
           N R + P YR  +P+Y +S PL++      +C   L VY
Sbjct: 253 NYRVSYPTYRVSNPTYRVSNPLIKSLAQLIKCLAQLIVY 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,321
Number of Sequences: 59808
Number of extensions: 344671
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)