Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0165
         (520 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U71268-1|AAD00180.1|  575|Homo sapiens potential transcriptional...    29   9.8  
U71267-1|AAD00179.1|  642|Homo sapiens potential transcriptional...    29   9.8  
BC035590-1|AAH35590.1|  572|Homo sapiens CCR4-NOT transcription ...    29   9.8  
AL389980-1|CAB97536.1|  572|Homo sapiens NOT4, potential transcr...    29   9.8  
AK074671-1|BAC11125.1|  565|Homo sapiens protein ( Homo sapiens ...    29   9.8  

>U71268-1|AAD00180.1|  575|Homo sapiens potential transcriptional
           repressor NOT4Hp protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 211 VQDYPGISRVKLKQFSEHRIRVVGT*GSGKLSHSSAGTNA 92
           VQD P +S   L+  S H     G  GSG L H +A TNA
Sbjct: 425 VQDQPSLSPTSLQNSSSHTTTAKGP-GSGFL-HPAAATNA 462


>U71267-1|AAD00179.1|  642|Homo sapiens potential transcriptional
           repressor NOT4Hp protein.
          Length = 642

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 211 VQDYPGISRVKLKQFSEHRIRVVGT*GSGKLSHSSAGTNA 92
           VQD P +S   L+  S H     G  GSG L H +A TNA
Sbjct: 425 VQDQPSLSPTSLQNSSSHTTTAKGP-GSGFL-HPAAATNA 462


>BC035590-1|AAH35590.1|  572|Homo sapiens CCR4-NOT transcription
           complex, subunit 4 protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 211 VQDYPGISRVKLKQFSEHRIRVVGT*GSGKLSHSSAGTNA 92
           VQD P +S   L+  S H     G  GSG L H +A TNA
Sbjct: 422 VQDQPSLSPTSLQNSSSHTTTAKGP-GSGFL-HPAAATNA 459


>AL389980-1|CAB97536.1|  572|Homo sapiens NOT4, potential
           transcriptional repressor, alternatively spliced product
           protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 211 VQDYPGISRVKLKQFSEHRIRVVGT*GSGKLSHSSAGTNA 92
           VQD P +S   L+  S H     G  GSG L H +A TNA
Sbjct: 422 VQDQPSLSPTSLQNSSSHTTTAKGP-GSGFL-HPAAATNA 459


>AK074671-1|BAC11125.1|  565|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90190 fis, clone MAMMA1001094, highly similar to
           Human potential transcriptional repressor NOT4Hp (NOT4H)
           mRNA. ).
          Length = 565

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 211 VQDYPGISRVKLKQFSEHRIRVVGT*GSGKLSHSSAGTNA 92
           VQD P +S   L+  S H     G  GSG L H +A TNA
Sbjct: 223 VQDQPSLSPTSLQNSSSHTTTAKGP-GSGFL-HPAAATNA 260


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,029,679
Number of Sequences: 237096
Number of extensions: 1601416
Number of successful extensions: 7525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7523
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)