Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0165
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.47 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.47 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 445 LPNYRSPSYSISFPLLQRKRYTRRCKVDL 359
           LP+YR   Y  S  LL  + Y  R   DL
Sbjct: 251 LPDYRGEEYLYSHKLLLNRYYLERLSNDL 279


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 445 LPNYRSPSYSISFPLLQRKRYTRRCKVDL 359
           LP+YR   Y  S  LL  + Y  R   DL
Sbjct: 251 LPDYRGEEYLYSHKLLLNRYYLERLSNDL 279


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 343 RVCILISLLCTFSCTAFSAAMETKWSKKESDSLEAL 450
           RVC+ IS    + C+        ++S   SDS  A+
Sbjct: 105 RVCVAISSRMEYECSRIDYFPNEEYSPDPSDSTMAI 140


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 448 ALPNYRSPSYSISFP 404
           A+ N RSPSYS+  P
Sbjct: 99  AMRNDRSPSYSMQVP 113


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 448 ALPNYRSPSYSISFP 404
           A+ N RSPSYS+  P
Sbjct: 547 AMRNDRSPSYSMQVP 561


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   EENSEDNDDGAEDR 49
           ++N ED DDGA  R
Sbjct: 214 KKNKEDEDDGATPR 227


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 402 CCRESGTREGA 370
           CC+ESG RE +
Sbjct: 77  CCQESGEREAS 87


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 41  LLRRHCPHCSP 9
           +LR  CP CSP
Sbjct: 75  VLRGACPQCSP 85


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 5   HEENSEDNDDGAEDRL 52
           HE N +DN+D  E+ +
Sbjct: 414 HEHNVDDNEDHDENMI 429


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 41  LLRRHCPHCSP 9
           +LR  CP CSP
Sbjct: 75  VLRGACPQCSP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,476
Number of Sequences: 438
Number of extensions: 3485
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)