Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0165
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24200.1 68417.m03474 expressed protein hypothetical protein ...    30   0.81 
At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3)  InDels ...    30   1.1  
At5g62980.1 68418.m07902 dihydroneopterin aldolase, putative sim...    29   1.4  
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i...    29   2.5  
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain...    28   3.3  

>At4g24200.1 68417.m03474 expressed protein hypothetical protein -
           Arabidopsis thaliana,PIR2:T06677
          Length = 1000

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 187 EKSQDSPEHSRSPDHHTAGPTGTADVVERILFEDKSFNFINLLEQPND 330
           E  Q   ++SR  D HT  P+    V E   FE+      +L+++ +D
Sbjct: 508 ESGQSGSQYSRDDDVHTGSPSKGLSVTENHSFEEPHVGDDDLMDEKDD 555


>At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3)  InDels
           between the genome sequence and the cDNA prevent
           identical translations from being annotated; the basis
           for this is under investigation.
          Length = 87

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 126 ANCLTPLQ-ERTHSHAHTSTIRLTP 55
           A C TP   +RTHS ++ ST RLTP
Sbjct: 50  ARCFTPYSSQRTHSGSNNSTNRLTP 74


>At5g62980.1 68418.m07902 dihydroneopterin aldolase, putative
           similar to SP|O33725 Dihydroneopterin aldolase (EC
           4.1.2.25) (DHNA) {Streptococcus pyogenes}; contains Pfam
           profile PF02152: dihydroneopterin aldolase
          Length = 131

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/74 (20%), Positives = 40/74 (54%)
 Frame = +2

Query: 41  EDRLQGVSRMVEVCAWLCVRSCRGVRQFATALSAYNAYPVFTKLLKLDTRNPRIVLNIVG 220
           E++  G   M+++ AW+C++        A ++S  + Y V  ++++  +RN  ++  + G
Sbjct: 28  EEKTLGQMFMLDIDAWMCLKKAGLSDNLADSVSYVDIYNVAKEVVEGSSRN--LLERVAG 85

Query: 221 LLITILQDLPEQLT 262
           L+ +   ++  ++T
Sbjct: 86  LIASKTLEISPRIT 99


>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
           superoxide dismutase, putative similar to Fe-superoxide
           dismutase precursor [Medicago sativa]
           gi|16974682|gb|AAL32441
          Length = 305

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 374 PSRVPLSLQQWKRNGVRRRAIVWKRSTVIVTLL*TGPQDWPL 499
           PS+ P    QWKRNG RR       S VI       P  +PL
Sbjct: 21  PSQGPNRRMQWKRNGKRRLGTKVAVSGVITAGFELKPPPYPL 62


>At4g27910.1 68417.m04006 PHD finger protein-related / SET
           domain-containing protein (TX4) nearly identical over
           285 amino acids to trithorax 4 [Arabidopsis thaliana]
           GI:16118405; contains Pfam profiles PF00856: SET domain,
           PF00855: PWWP domain; identical to cDNA trithorax 4
           (TX4) partial cds GI:16118404
          Length = 1027

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 205 PEHSRSPDHHTAGPTGTADVVERILFEDKSFN 300
           P H+R P HH +    T +    +  E KSF+
Sbjct: 839 PHHTRGPRHHASAAIQTLNTFRHVPEEPKSFS 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,339
Number of Sequences: 28952
Number of extensions: 218104
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)