Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0164
         (524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.8  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   5.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 125 YPYWTHKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 6
           Y Y    + P + VS+   + L    H    LP FC N D
Sbjct: 94  YSYANGAAGP-IPVSMASKMGLAPTGHPGAALPFFCHNGD 132


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 451 RGNAIYLESSHIYHLYSSNGASC 519
           +G    L+ SH  H    NG +C
Sbjct: 137 KGKTCSLKDSHCDHTTCKNGGTC 159


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 84  NNKAWRRFMSPVRIIH 131
           NN  ++ F+S V IIH
Sbjct: 209 NNGHYKNFLSQVEIIH 224


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 84  NNKAWRRFMSPVRIIH 131
           NN  ++ F+S V IIH
Sbjct: 34  NNGHYKNFLSQVEIIH 49


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 179 VYNHPLYTKLRSLLECMDYPYWTHKSP 99
           +Y HPL+  L  + E  +    T + P
Sbjct: 80  IYGHPLFPLLALIFEKCELATCTPREP 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,233
Number of Sequences: 336
Number of extensions: 2866
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)