Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0164
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   1.7  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    27   1.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   3.0  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   4.0  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   6.9  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   6.9  

>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 403 NALIRSILDYGTFILEPCNAVALHKLDIIQSKALRI 296
           NAL++ I  Y     E  +A+A   L+ I+SKALR+
Sbjct: 200 NALMKVIAGYDEENTEDYSALAAADLESIRSKALRV 235


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
 Frame = -2

Query: 451 SGVWWGAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDI----IQSKALRIIAGA 284
           S  WW      +K     ++ S+L YG  +    +   L K ++    + +    I A A
Sbjct: 90  SKAWWKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFA 149

Query: 283 MRSSPINALQSNVLKPPCTSDDNFFVTGFYLEHSKFIIILFTLSYGLCW 137
           +    ++AL  + +        N+ + G +L+    I++L      L W
Sbjct: 150 IYQGIVSAL--DTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIW 196


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 200 FLFRAFQVYNHPLYTKLRSLLECMDYPYWTHKS 102
           F+F A Q YN   Y ++ S L   + P+W+  S
Sbjct: 393 FIFVAQQTYNALGYAQVVSDLNSTELPFWSDSS 425


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 110  HKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 6
            H S   L    Q  L +    H  + LP  C NYD
Sbjct: 1065 HNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYD 1099


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 313 TG*CLTYGELLHYRVQV*MFHSPKYSLL 396
           TG C+T   L ++R+Q   ++  KY++L
Sbjct: 226 TGICITVDSLFYHRIQFVAWNIVKYNVL 253


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 104 SPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 6
           S  CLI+  +K LALQA  H  + LP   +  D
Sbjct: 77  SEQCLILVHRKELALQALKHCRESLPNKSIEID 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,889
Number of Sequences: 5004
Number of extensions: 47228
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)