Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0164
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0097 + 20062385-20062745,20063374-20063613,20063831-200641...    30   1.3  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    29   2.3  
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173...    29   2.3  
05_06_0243 - 26639497-26641173                                         28   5.3  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    27   7.0  
01_06_0736 - 31585840-31586459,31586545-31587070,31588051-315881...    27   7.0  
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924...    27   7.0  

>11_06_0097 +
           20062385-20062745,20063374-20063613,20063831-20064102,
           20064304-20064315
          Length = 294

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 259 LQSNVLKPPCTSDDNFFVTGFYLEHSKFIIILFTLSYGLCWNVWIIRTGLINRR 98
           L  ++LK  C  +D     G Y +H + + + F L  G    +W++ + L+ ++
Sbjct: 226 LCGDILKKKCPGNDASNDYGSYKDHYELLYLCFGLVIGFVLGLWVVFSTLLFKK 279


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 331 KLDIIQSKALRIIAGAMRSSPI-NALQSNVLKPPCTSDDNFFVTGFYLEHSKFIIIL 164
           KL++I    +RI    +R  P+ + L+S +L   C ++ NF+     LEHS  ++ L
Sbjct: 300 KLELIAGPEMRIFRSDLRWCPLFSKLKSLLLNEWCVAN-NFWALACILEHSPVLLKL 355


>10_08_0410 -
           17716370-17716743,17716839-17716939,17717104-17717300,
           17717392-17717677,17717768-17718004,17718226-17718281,
           17720042-17721226
          Length = 811

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -2

Query: 436 GAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRII----AGAMRSSP 269
           G HP+SL  + N ++RS       I +P  + +  +L+++Q K   ++      A RSSP
Sbjct: 552 GGHPYSLATIRNGILRSNRRQPYTIAKPFGS-SDKRLELVQGKVNPLVHFGLCDATRSSP 610

Query: 268 I 266
           I
Sbjct: 611 I 611


>05_06_0243 - 26639497-26641173
          Length = 558

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 364 ILEPCNAVALHKLDIIQSKALR 299
           I+E C+A+ALH L +++S A+R
Sbjct: 320 IVEFCSAIALHSLGMLESIAIR 341


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 98  PCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 6
           P ++  L  Y  L    +R+QFL ++C  YD
Sbjct: 504 PLILPFLLVYFFLGYVVYRNQFLNVYCTKYD 534


>01_06_0736 -
           31585840-31586459,31586545-31587070,31588051-31588149,
           31589344-31589427,31589458-31589775,31589907-31590113
          Length = 617

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 361 LEPCNAVALHKLDIIQSKALRIIAGAMRSSPINALQSNVLK 239
           +  C+A AL++L+   S A +     +  +P+N +Q  +++
Sbjct: 492 INDCDAFALYRLEFKSSDAKKTAKSKLACNPLNEIQQQMVR 532


>01_01_1161 +
           9244628-9245748,9247696-9247828,9248233-9248448,
           9249802-9249957,9250788-9250979,9251118-9251234,
           9251822-9252193
          Length = 768

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 406 YNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGAMRSSPIN 263
           +N L+R +   G   +  CN   +   D I+S  + ++ G M   P+N
Sbjct: 518 WNDLVRDLRRRGVRTMTYCNPCLVPANDGIKSSVVGLLTGGMSGFPLN 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,856
Number of Sequences: 37544
Number of extensions: 284560
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)