Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0164
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 128 DYPYWTH-KSPPCLIVSLQKYLALQAPTHRSQFLPIF 21
           D PYW   KSP  LIV L  +  + A    + ++PI+
Sbjct: 237 DIPYWKIIKSPVILIVWLNAFFEMTAVIFFATYMPIY 273


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 263 RFAVECSEAPLHXRRQFLC-DRFLFRAFQVYNHPLY 159
           R+  +C   PLH    FLC   F F  F ++ H  Y
Sbjct: 28  RYHEKCFSIPLHTLNYFLCVIIFYFFVFTIFYHERY 63


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 412 LLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGAMRSSPIN 263
           LLY   IR  L+YGT +  P        ++ +Q+   R +   ++   IN
Sbjct: 192 LLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIKKRYIN 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,744
Number of Sequences: 27780
Number of extensions: 252852
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)