Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0164
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.47 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.47 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.5  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.5  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   3.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   4.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 209 CDRFLFRAFQVYNHP--LYTKLRSLLECMDYPYWTHK 105
           CD  +  A  V N    +Y +L++   CM+Y  +T+K
Sbjct: 468 CDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYK 504


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 209 CDRFLFRAFQVYNHP--LYTKLRSLLECMDYPYWTHK 105
           CD  +  A  V N    +Y +L++   CM+Y  +T+K
Sbjct: 468 CDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYK 504


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 190 EHSKFIIILFTLSYGLCWNVWIIRTGLIN 104
           E+   I   + +   +C  +W++ +GLIN
Sbjct: 114 ENCSGITSAYKIEIDMCDRLWVLDSGLIN 142


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 423 KGWAPHQTPERQRNIFRIFSHL 488
           +G  P  +PE  R I ++ SH+
Sbjct: 77  RGACPQCSPEETRQIKKVLSHI 98


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 423 KGWAPHQTPERQRNIFRIFSHL 488
           +G  P  +PE  R I ++ SH+
Sbjct: 77  RGACPQCSPEETRQIKKVLSHI 98


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 493 SDKCEKILNILRCL 452
           SD C KI N+ +C+
Sbjct: 120 SDNCNKIYNLAKCV 133


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 493 SDKCEKILNILRCL 452
           SD C KI N+ +C+
Sbjct: 120 SDNCNKIYNLAKCV 133


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 493 SDKCEKILNILRCL 452
           SDKCEK    ++C+
Sbjct: 119 SDKCEKSFMFMKCM 132


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 493 SDKCEKILNILRCLS 449
           +DKCE  LN + C S
Sbjct: 125 TDKCENGLNFIICFS 139


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 125 NPYIPAETVT*CKEDDYKLGML 190
           N Y+P   +T C  D +  G+L
Sbjct: 191 NRYVPEGNMTACGTDYFNRGLL 212


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 175 IIILFTLSYGLCWNVWIIRTGLIN 104
           I+    L+   C  +W++ +GL+N
Sbjct: 121 IVSASKLAIDKCDRLWVLDSGLVN 144


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 175 IIILFTLSYGLCWNVWIIRTGLIN 104
           I+    L+   C  +W++ +GL+N
Sbjct: 121 IVSASKLAIDKCDRLWVLDSGLVN 144


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 125 NPYIPAETVT*CKEDDYKLGML 190
           N Y+P   +T C  D +  G+L
Sbjct: 67  NRYVPEGNMTACGTDYFNRGLL 88


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 175 IIILFTLSYGLCWNVWIIRTGLIN 104
           I+    L+   C  +W++ +GL+N
Sbjct: 121 IVSASKLAIDKCDRLWVLDSGLVN 144


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 175 IIILFTLSYGLCWNVWIIRTGLINR 101
           I+  F ++      +W++ +GL+NR
Sbjct: 122 IVSAFKIAIDKFDRLWVLDSGLVNR 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,386
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)